Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0054
(431 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0224 + 1789447-1789633,1789959-1790261,1793380-1793542,179... 30 0.92
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 1.2
03_06_0043 - 31251772-31251965,31252071-31252158 29 1.6
02_01_0384 - 2781362-2782299,2782320-2782428 29 1.6
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 29 2.1
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 28 2.8
01_06_0373 - 28841462-28842850 28 3.7
11_01_0052 - 396822-396965,397332-397541,397686-397815,397956-39... 27 4.9
10_02_0112 + 5385660-5385821,5386337-5386876 27 4.9
08_01_0123 + 974941-975186,975274-977505 27 4.9
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995... 27 6.5
11_01_0013 - 103484-103493,103787-103897,104279-104781,105119-10... 27 6.5
08_01_0227 + 1827461-1827674,1827844-1828143,1828272-1828434,182... 27 6.5
01_01_1152 + 9170628-9171899 27 6.5
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 27 8.6
08_02_0902 - 22408895-22409620,22410190-22410326,22410550-224106... 27 8.6
02_05_0592 - 30210219-30210757,30210898-30210919 27 8.6
>08_01_0224 +
1789447-1789633,1789959-1790261,1793380-1793542,
1793561-1793597,1794305-1794925
Length = 436
Score = 29.9 bits (64), Expect = 0.92
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 371 IRHFKLNAFN*SKITAFTREFCSYSIVVREADSFQKLFMGFTIRS 237
+RH ++ +N + + FC+Y+I + D KL G I+S
Sbjct: 130 VRHREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKS 174
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +3
Query: 288 DDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENF 413
+++++ A+K+ ++ ++KG+E+ A K++ G LDE+F
Sbjct: 594 NEESVANYCATKNNNVWNVKGLEVTGAIKLFDQRWGNLDEDF 635
>03_06_0043 - 31251772-31251965,31252071-31252158
Length = 93
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 104 EICDG-CHCRDGDSKQTNDCLHVCGLRLSNVSLVP 3
+ CDG C R + + +DCL CG+ ++ + VP
Sbjct: 30 DFCDGKCKVRCSKASRHDDCLKYCGVCCASCNCVP 64
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 29.1 bits (62), Expect = 1.6
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -2
Query: 358 SSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEAKAN*ARGGSTENAER 191
S++P R+RL S +SG P +SSS SPS A RGG ++ R
Sbjct: 211 SASPASPSRTRLAPPRSPPAGGASGAPR--RSSSAASPSCAGVEGPRGGEVDDGRR 264
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 306 TEFASKSRDLRSIKGVELKMANKVYVHDG 392
T+ S S+D++ ++ VE + N VHDG
Sbjct: 520 TQIPSASKDIKEVRAVEEFLPNDFVVHDG 548
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2
Query: 346 LIDRRSRLLLANSVRIASSSGK 281
LIDRR RLL NS A++SGK
Sbjct: 643 LIDRRRRLLEVNSAVAAAASGK 664
>01_06_0373 - 28841462-28842850
Length = 462
Score = 27.9 bits (59), Expect = 3.7
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 189 VLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRD 332
+L+ F LP L A+ GE EEL+ A G P A + RD
Sbjct: 125 ILAFFLYLPVLHAQTTANFGEMGEELVHAPGIPSFPATHSVLPLMERD 172
>11_01_0052 -
396822-396965,397332-397541,397686-397815,397956-398126,
398723-398827,398940-399613,399659-399688,399756-399932
Length = 546
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 306 TEFASKSRDLRSIKGVELKMANKVYVHDG 392
T+ S S+D++ ++ V+ + N VHDG
Sbjct: 139 TQIPSASKDIKEVRAVDEFLPNDFVVHDG 167
>10_02_0112 + 5385660-5385821,5386337-5386876
Length = 233
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +3
Query: 54 ICLFTIAIAAMAAVTNLSNVLKNGNDNF--TARMFTEVVKNNPGKSVVLSAFSVLPPLAQ 227
+CL T+ + + ++ +S++LK G +NF ++ + VV+ P K + +F L +
Sbjct: 43 MCLSTLRYLSSSLLSRVSHLLKVGRNNFRPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVR 102
Query: 228 LALASDGETHEELLK 272
L +T + K
Sbjct: 103 LCFNRKNKTLGAIFK 117
>08_01_0123 + 974941-975186,975274-977505
Length = 825
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 153 TEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDD 293
T ++ +P +L L +A A A+DG H L +G PDD
Sbjct: 617 TNILNYSPCSVAILVDRGSLSTVAAAAAAADGFPHRVALYFLGGPDD 663
>12_01_0013 -
99290-99299,99593-99703,100085-100587,100925-100995,
101413-101491,102336-102956
Length = 464
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 152 KHSGCEVIVSIFEHIREICDGCHCRDG--DSKQTNDC 48
K GC+ + + + GCHC DG + + +DC
Sbjct: 386 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDC 422
>11_01_0013 -
103484-103493,103787-103897,104279-104781,105119-105189,
105607-105685,106530-107153
Length = 465
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 152 KHSGCEVIVSIFEHIREICDGCHCRDG--DSKQTNDC 48
K GC+ + + + GCHC DG + + +DC
Sbjct: 387 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDC 423
>08_01_0227 +
1827461-1827674,1827844-1828143,1828272-1828434,
1828453-1828489,1829207-1829737,1830677-1830829
Length = 465
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = -1
Query: 389 IMNVYFIRHFKLNAFN*SKITAFTREFCSYSIVVREADSFQKLFMGFTIRS 237
++N+ +R ++ +N + + FC+Y+I + D KL G I+S
Sbjct: 134 VLNI--VRRREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKS 182
>01_01_1152 + 9170628-9171899
Length = 423
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 177 GKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFP 287
G++ ++S S LA +A + GET ELL +G P
Sbjct: 58 GRNFIVSPLSFHAALALVADGARGETQRELLGFLGSP 94
>11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 26.6 bits (56), Expect = 8.6
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -1
Query: 104 EICDGCHCR 78
E CDGCHCR
Sbjct: 1322 EYCDGCHCR 1330
>08_02_0902 -
22408895-22409620,22410190-22410326,22410550-22410685,
22410787-22411224
Length = 478
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +2
Query: 32 GHKHEDNHLFVYYRHRGNGS--RH--KSL*CAQKWKR 130
G+ +ED H + Y + NGS +H KSL A W R
Sbjct: 165 GYCYEDEHRMLVYEYMSNGSLEKHLFKSLDGAMPWMR 201
>02_05_0592 - 30210219-30210757,30210898-30210919
Length = 186
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 174 PGKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDA 299
P ++V VLP A++ A+ G TH+ ++ +GF D+A
Sbjct: 35 PMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEA 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,001,245
Number of Sequences: 37544
Number of extensions: 211915
Number of successful extensions: 694
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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