Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0053
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    27   1.1  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   6.0  

>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 309 ETTVFNIFRNYLKQKPE 359
           +T V N FR YL+QKPE
Sbjct: 219 KTKVKNYFRTYLRQKPE 235


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 259 DASPKFAQAAEQNTIVEKQPYLI 327
           D +PK A  AE   + EK+P+ +
Sbjct: 523 DEAPKAAPLAESKKVEEKEPFYV 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,332,921
Number of Sequences: 5004
Number of extensions: 20664
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)