Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0053
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25925| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_35465| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.8  

>SB_25925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 252 NIRCVSEVRTSS*AEHNCRETTVFNIFRNYLKQ 350
           N+ C +    +S + HN R++T+ N+ R+ +KQ
Sbjct: 107 NVNCFANRGMTSISSHNLRDSTMRNLIRDEVKQ 139


>SB_35465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 98  ITFKKN*RRNSLFHMLVVCVCVYSIDLILT 187
           I+FK +   NS +  L V +CV SIDL +T
Sbjct: 44  ISFKGHCCHNSSYTDLTVTLCVLSIDLTVT 73


>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -2

Query: 42 FLQPGDPLVLGAAP 1
          FLQPGDPLVL   P
Sbjct: 34 FLQPGDPLVLERPP 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,740,342
Number of Sequences: 59808
Number of extensions: 145903
Number of successful extensions: 1777
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1775
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)