Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0052
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    26   0.34 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    25   0.44 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   4.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   5.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   5.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.6  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 606 LKYTY*YENICYFYNSKNLRLRIYFENII 520
           L   Y Y N  Y YN  N   ++Y++N I
Sbjct: 318 LSNNYNYNNNNYKYNYNNYNKKLYYKNYI 346


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 600 YTY*YENICYFYNSKNLRLRIYFENII 520
           Y Y Y N  Y YN+ N   ++Y++N I
Sbjct: 96  YKYNYNNK-YNYNNNNYNKKLYYKNYI 121


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +2

Query: 218 TFDFFKARGIL 250
           TFDF+K+RG++
Sbjct: 25  TFDFWKSRGVV 35


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = +3

Query: 531 QNIFLDVNFWNYKSNKYF 584
           + I +D+  W ++++KY+
Sbjct: 12  RGITIDIALWKFETSKYY 29


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = +3

Query: 531 QNIFLDVNFWNYKSNKYF 584
           + I +D+  W ++++KY+
Sbjct: 69  RGITIDIALWKFETSKYY 86


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 525 YSQNIFLDVNFWNYKS 572
           Y  N+ +DV+ WN K+
Sbjct: 62  YKNNVPIDVDRWNGKT 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,504
Number of Sequences: 438
Number of extensions: 3227
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)