Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0052
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18260.1 68417.m02711 cytochrome B561-related related to cyto...    27   9.9  

>At4g18260.1 68417.m02711 cytochrome B561-related related to
           cytochrome b-561 (GI:20345443) [Mus musculus]; multidrug
           resistance protein, Homo sapiens, PIR2:S71841
          Length = 545

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 351 QRIDIAKLTYQYEKKKGNQN-STSIVTLN*RCTKSRIPRALKKSN 220
           QR+ + +L +Q     G  N S  +VT N    K  +P+  +KSN
Sbjct: 231 QRVVLDELDHQNNNTNGRNNQSIQVVTRNDHEQKVMVPQPCRKSN 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,150,383
Number of Sequences: 28952
Number of extensions: 199879
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)