Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0050
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.1  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 197 PGAMIKCRLRSV*FKVSLSLPATSSQYRKCS 289
           P +  +C ++    K+S+S P+T +   KC+
Sbjct: 326 PESNSRCSVKREKIKISVSYPSTETLNTKCN 356


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 132 NRYNTKTESRFHDRATTAHWKTMRKH 55
           N +NTK     +DR + + W  M KH
Sbjct: 103 NYWNTKNCVNPYDRDSLSCWLQMTKH 128


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = -3

Query: 228 LRSRHFIIAPGHICHIKNTRSNPYTPLFSKWQNRYNTKTE 109
           L ++ + I+P  + + K    +P TP+ + ++N   TK +
Sbjct: 7   LANKFYRISPQILKNDKRIYLSPRTPIKNVYKNNIETKNQ 46


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 16/70 (22%), Positives = 28/70 (40%)
 Frame = +1

Query: 292 EKTGKPLPDVLKQHFILEGRIEENAALRIIQDGATLLRSEKTMIEIDSPVTVCGDVHGQF 471
           E   K L  V+ QH  L   +E   A+         L  E   + +        D+  ++
Sbjct: 352 EAEKKNLSKVIDQHSQLIDTLENVLAI------VDRLMDETNQLTLQETADAFKDLQDKY 405

Query: 472 YDLMKLFEVG 501
           Y+  K++E+G
Sbjct: 406 YEEYKMYELG 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,898
Number of Sequences: 438
Number of extensions: 4570
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)