Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0047
(337 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 36 0.002
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 35 0.004
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 35 0.004
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 34 0.007
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 32 0.020
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 32 0.027
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 32 0.027
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.027
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 31 0.036
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 30 0.082
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 30 0.11
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.11
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.14
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 29 0.14
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.19
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.25
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 0.33
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 28 0.33
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 0.33
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 28 0.33
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 0.58
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 0.77
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 1.0
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 1.8
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 1.8
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 2.3
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 3.1
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 4.1
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 24 5.4
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 24 5.4
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 24 5.4
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 24 5.4
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 24 5.4
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 24 5.4
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 24 5.4
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 23 9.4
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.5 bits (78), Expect = 0.002
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +2
Query: 161 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEA 322
++ V++G L ++++E F K+GK+ + + L+ AF+ F N+++A
Sbjct: 295 TAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKI-LSKKNIAFVHFLNIRDA 347
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 34.7 bits (76), Expect = 0.004
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDA 331
+YV G +G++ +L EF+ +G L + + FAF+E+E+ ++AEDA
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDA 63
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 34.7 bits (76), Expect = 0.004
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV--ALNPPG----FAFIEFENLQEAEDAC 334
R+YVGGL I+ DLE F ++G ++++ + P G FA++ F ++ C
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKC 64
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 33.9 bits (74), Expect = 0.007
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +2
Query: 155 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
+M T V+VGGL + ++DL+ F +G++ ++ + G F+++ AE A
Sbjct: 291 SMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFG-KGCGFVQYSEKSAAEKA 348
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 32.3 bits (70), Expect = 0.020
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEA 322
R+++ L ++DL+ F +G+L V + + NP GFA+I+F + +A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDA 377
Score = 31.5 bits (68), Expect = 0.036
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVA----LNPPGFAFIEFENLQEAEDA 331
GT++ + L K+D++ YG+L SV V + GFAF EF +EA +A
Sbjct: 720 GTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANA 777
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 31.9 bits (69), Expect = 0.027
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEF 304
VYVG + + E+L+ F G +N V + + P GFA+IEF
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 31.9 bits (69), Expect = 0.027
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 212 KEDLEREFD-KYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
++D++ E D KYGK+ + V N G F++FEN AE A
Sbjct: 530 EQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKA 570
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 31.9 bits (69), Expect = 0.027
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEA 322
+YV L G + F YG + +W+ L+P A + +E+L A
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWM-LSPDNSAIVSYESLSSA 48
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 31.5 bits (68), Expect = 0.036
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 331
+++ L K+ D+EREF +YG + + V N G+AF+ FE ++ + A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVA 157
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 30.3 bits (65), Expect = 0.082
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAED 328
TR++VG + +ED+ F YG++ + +N GF F+E E+ ++A D
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKL-MN--GFGFVEVEDARDARD 52
Score = 23.4 bits (48), Expect = 9.4
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
G R+ V L E + +DL+ K G+ PG +EF ++ +A
Sbjct: 97 GFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNA 150
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 58 RDDY*TDGDPRADSCSPG 5
RDDY GD R D+ PG
Sbjct: 196 RDDYRRGGDYRRDAYRPG 213
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 29.9 bits (64), Expect = 0.11
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDAC 334
+++ L I E++ F +YG + + + + G AF+ +EN+Q+A AC
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRAC 67
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.11
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 267 TQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPPE 163
T+ +FPYL NSR+R S + P+ VPPE
Sbjct: 329 TEYRIAFPYLYNSRAR-SVALSEYHQPSNVFVPPE 362
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.14
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACS 337
G +YV + + ++D+E F YG++ SV + GF ++ Q+AE+A S
Sbjct: 756 GRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALS 814
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.5 bits (63), Expect = 0.14
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVA---------LNPPGFAFIEFENLQEAED 328
RV+VG L KK ++ F+ G + V + L P G AF+ F N ++ +
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 329 A 331
A
Sbjct: 105 A 105
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 29.1 bits (62), Expect = 0.19
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +2
Query: 158 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEA 322
M+S T ++V L K++DL F G + V NP G+ F+ F L++A
Sbjct: 1 MNSNST-LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDA 59
Query: 323 EDA 331
+ A
Sbjct: 60 QRA 62
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 0.25
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 337
+++VGG+ +E+ F+++G++ + ++ P GF F+ +EN E S
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMS 306
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 0.33
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVW 265
+YVG + + E++ + F KYG++ S++
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 28.3 bits (60), Expect = 0.33
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +2
Query: 215 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDA 331
EDLE F ++GK+ S V + +AFIEF+N + E A
Sbjct: 258 EDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 28.3 bits (60), Expect = 0.33
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYG----------KLNSVWVALNPPGFAFIEFENLQEAED 328
+YVG L + DL F+ +G K N + +P FAFI FEN A++
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 329 A 331
A
Sbjct: 82 A 82
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 28.3 bits (60), Expect = 0.33
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 331
VYVG L +E + F K G++ + + ++ P GF F+E+ Q+A D+
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDS 89
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.5 bits (58), Expect = 0.58
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAE 325
++VG L G+ + F YG ++S+ + L+ AF+ F++++ A+
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRM-LSHKHSAFLNFDSVETAK 636
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 0.77
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +2
Query: 158 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEA 322
+S V+VG L ++DL F G + S+ + +P GF ++ F ++ A
Sbjct: 361 LSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSA 420
Query: 323 E 325
+
Sbjct: 421 K 421
Score = 26.6 bits (56), Expect = 1.0
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 331
V+VG L + + L +EF++YG + V ++ G+ +++FE + A+ A
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAA 320
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 1.0
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 303 NSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVP 169
+S+ S+ + +S P SNS + S+ +I S +YT +P
Sbjct: 793 SSISTSVSSQSSMNSSYSSPISSNSVTSSTSIISSIASSSYTSIP 837
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 1.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 212 KEDLEREFDKYGKLNSVWVAL 274
KE++E EF+ YGK + V VAL
Sbjct: 435 KEEVEIEFELYGKNDDVNVAL 455
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 25.8 bits (54), Expect = 1.8
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDA 331
V+VG L + + L F +G++ SV + +AF+EF+ ++A++A
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEA 62
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 2.3
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDA 331
+YVG L + + L F+ G + S+ V + G+A++ F N+++ E A
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.0 bits (52), Expect = 3.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 332 THLPPPASSQIL*KRNLGDLVLPKLSLVF 246
THL S L ++ L +LV+P ++L+F
Sbjct: 1156 THLQSEESESQLREKILANLVMPNITLIF 1184
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 24.6 bits (51), Expect = 4.1
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 337
++Y+ L + ++ + +G L S + N GF F EF+N +AE A S
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAIS 369
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 24.2 bits (50), Expect = 5.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 312 KFSNSMKAKPGGFSATQTEFSFPY 241
KF++S K F+ T+TE S PY
Sbjct: 280 KFNSSFKTSNDFFTFTKTEESSPY 303
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 24.2 bits (50), Expect = 5.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 155 TMSSGGTRVYVGGLVEGIKKE 217
TM+ GGTRV GG+ I +
Sbjct: 785 TMTGGGTRVKKGGMSSAITSD 805
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 186 SAVSSRESRRKISNASSINMEN*TQ 260
SA S R ISN SS+N+ N T+
Sbjct: 147 SAKSLRSCNISISNCSSVNLHNATK 171
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 164 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEF 304
+ G V+VG + + ++ + F++ G + + + L+P G+ F EF
Sbjct: 4 TAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 24.2 bits (50), Expect = 5.4
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -2
Query: 306 SNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTR 175
S S++ + G A +TE Y N +S +P PP R
Sbjct: 2051 SGSLRRQKQGLMAYETESFRDYSPNEEIDASAKLPMDMPPVRVR 2094
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.2 bits (50), Expect = 5.4
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 336 LHASSASCKFSNSM-KAKPGGFSATQTEFSFPYLSNSRSRSSF 211
L A SA +F S KAK + + S Y NSRSRSSF
Sbjct: 1590 LRARSAKQRFPVSQWKAKLEALTDGCIKCSQKYGRNSRSRSSF 1632
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 182 YVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 280
Y G LV+G +K +E D +LNS+ ++P
Sbjct: 116 YEGRLVDGTRKMKVEIILDPSRQLNSLAARVSP 148
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 23.4 bits (48), Expect = 9.4
Identities = 5/20 (25%), Positives = 15/20 (75%)
Frame = -1
Query: 187 DVHASTTRTHGLVLFMKIQL 128
++HA+ + HG ++F ++++
Sbjct: 837 EIHAALDQVHGAIIFERVEI 856
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,335,548
Number of Sequences: 5004
Number of extensions: 23848
Number of successful extensions: 115
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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