Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0047
(337 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 68 1e-12
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 68 1e-12
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 68 1e-12
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 48 2e-06
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 48 2e-06
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 48 2e-06
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 47 3e-06
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 47 3e-06
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 44 3e-05
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 44 3e-05
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 44 3e-05
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 40 3e-04
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 40 6e-04
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 38 0.002
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 38 0.002
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 38 0.002
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 38 0.002
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 36 0.007
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 36 0.007
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 36 0.007
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 36 0.010
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 36 0.010
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 34 0.022
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 34 0.022
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 33 0.039
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 33 0.039
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 33 0.039
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 33 0.051
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 33 0.051
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 33 0.067
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 33 0.067
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 33 0.067
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.067
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 32 0.089
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 32 0.12
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 32 0.12
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 32 0.12
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 31 0.16
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 31 0.27
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 31 0.27
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 31 0.27
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 31 0.27
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 31 0.27
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 31 0.27
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 31 0.27
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 30 0.36
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 30 0.36
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 30 0.36
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 30 0.36
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 30 0.36
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 29 0.83
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 29 0.83
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 29 0.83
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 29 0.83
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 29 1.1
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 29 1.1
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 28 1.4
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 28 1.4
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 28 1.9
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 28 1.9
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 28 1.9
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 28 1.9
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 27 2.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 27 2.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 27 2.5
AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical ... 27 2.5
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 27 3.3
U88175-6|AAB42283.1| 234|Caenorhabditis elegans Hypothetical pr... 27 4.4
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 26 5.8
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 68.1 bits (159), Expect = 1e-12
Identities = 26/52 (50%), Positives = 40/52 (76%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
+VYVGGL ++LE FD++G++ VWVA PPGFAF+E++++++AEDA
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDA 55
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 68.1 bits (159), Expect = 1e-12
Identities = 26/52 (50%), Positives = 40/52 (76%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
+VYVGGL ++LE FD++G++ VWVA PPGFAF+E++++++AEDA
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDA 55
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 68.1 bits (159), Expect = 1e-12
Identities = 26/52 (50%), Positives = 40/52 (76%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
+VYVGGL ++LE FD++G++ VWVA PPGFAF+E++++++AEDA
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDA 55
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/53 (39%), Positives = 36/53 (67%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDAC 334
R+Y+G + ++ D+ER YGK+N++ + GFAF++FE+ ++AEDAC
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDAC 52
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/53 (39%), Positives = 36/53 (67%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDAC 334
R+Y+G + ++ D+ER YGK+N++ + GFAF++FE+ ++AEDAC
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDAC 52
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/53 (39%), Positives = 36/53 (67%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDAC 334
R+Y+G + ++ D+ER YGK+N++ + GFAF++FE+ ++AEDAC
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDAC 52
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 47.2 bits (107), Expect = 3e-06
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Frame = +2
Query: 158 MSSGGT---RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-PGFAFIEFENLQEAE 325
M GG+ +VYVG L ++++++E F KYG++ V + P FAF+EFE+ ++AE
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAE 60
Query: 326 DA 331
DA
Sbjct: 61 DA 62
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 47.2 bits (107), Expect = 3e-06
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Frame = +2
Query: 158 MSSGGT---RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-PGFAFIEFENLQEAE 325
M GG+ +VYVG L ++++++E F KYG++ V + P FAF+EFE+ ++AE
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAE 60
Query: 326 DA 331
DA
Sbjct: 61 DA 62
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 44.0 bits (99), Expect = 3e-05
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
R+Y+G L + ++D+E F YG++ V L GF F+EF++ ++AEDA
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDA 52
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 44.0 bits (99), Expect = 3e-05
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
R+Y+G L + ++D+E F YG++ V L GF F+EF++ ++AEDA
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDA 52
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 44.0 bits (99), Expect = 3e-05
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
R+Y+G L + ++D+E F YG++ V L GF F+EF++ ++AEDA
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDA 52
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
RVY+G L D+E F YGKL+ V + GF F++F++ ++A+DA
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV---IMKNGFGFVDFQDQRDADDA 51
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 39.5 bits (88), Expect = 6e-04
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 221 LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
+E F G + S+W+A PPGFAF+ F+ A DA
Sbjct: 44 IEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHAFDA 80
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 37.9 bits (84), Expect = 0.002
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNS---VWVALNPPGFAFIEFENLQEAEDA 331
T VYV + KE LE+ F K+G + S + V GF F+ F N +EAE A
Sbjct: 213 TNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETA 268
Score = 35.5 bits (78), Expect = 0.010
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDA 331
G +YV L E + + L+++F+ YG + S V + GF F+ FE +EA A
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSA 373
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNS---VWVALNPPGFAFIEFENLQEAEDA 331
T VYV + KE LE+ F K+G + S + V GF F+ F N +EAE A
Sbjct: 153 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETA 208
Score = 35.5 bits (78), Expect = 0.010
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDA 331
G +YV L E + + L+++F+ YG + S V + GF F+ FE +EA A
Sbjct: 256 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSA 313
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNS---VWVALNPPGFAFIEFENLQEAEDA 331
T VYV + KE LE+ F K+G + S + V GF F+ F N +EAE A
Sbjct: 150 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETA 205
Score = 35.5 bits (78), Expect = 0.010
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDA 331
G +YV L E + + L+++F+ YG + S V + GF F+ FE +EA A
Sbjct: 253 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSA 310
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNS---VWVALNPPGFAFIEFENLQEAEDA 331
T VYV + KE LE+ F K+G + S + V GF F+ F N +EAE A
Sbjct: 213 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETA 268
Score = 35.5 bits (78), Expect = 0.010
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDA 331
G +YV L E + + L+++F+ YG + S V + GF F+ FE +EA A
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSA 373
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 35.9 bits (79), Expect = 0.007
Identities = 16/53 (30%), Positives = 32/53 (60%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDAC 334
R++VGGL KE L++ F ++G + ++ P +A++ +EN +++AC
Sbjct: 252 RLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEAC 303
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDA 331
++VG + +K+ ++ F+++GK+ V + +AF+ F+ + +A A
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQA 224
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 35.9 bits (79), Expect = 0.007
Identities = 16/53 (30%), Positives = 32/53 (60%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDAC 334
R++VGGL KE L++ F ++G + ++ P +A++ +EN +++AC
Sbjct: 252 RLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEAC 303
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDA 331
++VG + +K+ ++ F+++GK+ V + +AF+ F+ + +A A
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQA 224
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 35.9 bits (79), Expect = 0.007
Identities = 16/53 (30%), Positives = 32/53 (60%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDAC 334
R++VGGL KE L++ F ++G + ++ P +A++ +EN +++AC
Sbjct: 229 RLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEAC 280
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDA 331
++VG + +K+ ++ F+++GK+ V + +AF+ F+ + +A A
Sbjct: 148 LFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQA 201
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 35.5 bits (78), Expect = 0.010
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSV-W----VALNPPGFAFIEFENLQEAEDACS 337
+V+VGGL ++DL F+++GK++ + W FAFI FE + A+ A S
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASS 169
Score = 33.5 bits (73), Expect = 0.039
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +2
Query: 155 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEF 304
T + +++VGG+ + EDL F +YG++ V + GFAF+EF
Sbjct: 23 TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 35.5 bits (78), Expect = 0.010
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSV-W----VALNPPGFAFIEFENLQEAEDACS 337
+V+VGGL ++DL F+++GK++ + W FAFI FE + A+ A S
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASS 169
Score = 33.5 bits (73), Expect = 0.039
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +2
Query: 155 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEF 304
T + +++VGG+ + EDL F +YG++ V + GFAF+EF
Sbjct: 23 TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 34.3 bits (75), Expect = 0.022
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDAC 334
+V++GGL ED+++ F+ YGK+ + + GF F+ F++ + A+ C
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVC 192
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 34.3 bits (75), Expect = 0.022
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDAC 334
+V++GGL ED+++ F+ YGK+ + + GF F+ F++ + A+ C
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVC 192
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 33.5 bits (73), Expect = 0.039
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDA 331
G V+V + E ++D+ +F +YGK+ ++ + L+ G+A +E+E +EA +A
Sbjct: 54 GWIVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEA 112
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 33.5 bits (73), Expect = 0.039
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDA 331
R+YV + +++DL F YG++ SV + N GF F+ ++++ E A
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKA 106
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 33.5 bits (73), Expect = 0.039
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDA 331
R+YV + +++DL F YG++ SV + N GF F+ ++++ E A
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKA 106
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 33.1 bits (72), Expect = 0.051
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 167 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDA 331
G R++V + + DL+ F+K+G ++ V + N GF F+ E Q+AE A
Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERA 208
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 33.1 bits (72), Expect = 0.051
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 167 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDA 331
G R++V + + DL+ F+K+G ++ V + N GF F+ E Q+AE A
Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERA 208
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 32.7 bits (71), Expect = 0.067
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +2
Query: 164 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAED 328
SG VYVG +E+L F G++N+V + + P GFAFIEF A+
Sbjct: 2 SGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQR 61
Query: 329 A 331
A
Sbjct: 62 A 62
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 32.7 bits (71), Expect = 0.067
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 158 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEA 322
M+S G VYVG + +E++ F G +N+V + + P GFAF+EF A
Sbjct: 1 MASQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGA 60
Query: 323 EDA 331
+ A
Sbjct: 61 QRA 63
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 32.7 bits (71), Expect = 0.067
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDA 331
V+VG L + + E L+ F K+G+++ V G+ F+ F N Q AE+A
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENA 192
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
T VYVG + + DL F YG + V + +AF+ +E + A A
Sbjct: 237 TSVYVGNISQQTTDADLRDLFSTYGDIAEVRI-FKTQRYAFVRYEKKECATKA 288
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 32.7 bits (71), Expect = 0.067
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDA 331
++VG + + L REF+ YGK+ + + A P G+AFIE+ + E A
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTA 160
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 32.3 bits (70), Expect = 0.089
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 331
VYVG + G E++E+ F G ++ V + + P GFA++EF + ++A
Sbjct: 80 VYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNA 135
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 31.9 bits (69), Expect = 0.12
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDA 331
RVYV + + + DL+ F+ +G++ +A P GF ++EF NL +A
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEA 264
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 31.9 bits (69), Expect = 0.12
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDA 331
RVYV + + + DL+ F+ +G++ +A P GF ++EF NL +A
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEA 264
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 31.9 bits (69), Expect = 0.12
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDA 331
RVYV + + + DL+ F+ +G++ +A P GF ++EF NL +A
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEA 264
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 31.5 bits (68), Expect = 0.16
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVW 265
+V+VGGL +K+ D+ F +YG+L W
Sbjct: 89 KVFVGGLPSCVKESDILNFFSRYGRLQVDW 118
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 30.7 bits (66), Expect = 0.27
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 331
V+VG + + ++ + F K G + S+ + + P G+ FIEF ++Q AE A
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVA 75
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 30.7 bits (66), Expect = 0.27
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 334
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 171
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 30.7 bits (66), Expect = 0.27
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 176 RVYVGGLVEGI-KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDAC 334
RV++G + I ++D+ F +GK+ +V GF F++F A+++C
Sbjct: 84 RVFIGNIARAIITRDDIIELFRPFGKIIAVNYFAQQ-GFGFVQFNEAGSADESC 136
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 30.7 bits (66), Expect = 0.27
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 334
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 77 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 133
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 30.7 bits (66), Expect = 0.27
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 334
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 77 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 133
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 30.7 bits (66), Expect = 0.27
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 334
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 171
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 30.7 bits (66), Expect = 0.27
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 334
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 171
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 30.3 bits (65), Expect = 0.36
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 215 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDA 331
EDLE F ++GK+N+ + + +AFIEF+N + E A
Sbjct: 255 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQA 298
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 30.3 bits (65), Expect = 0.36
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEF 304
R+++ L K++DL+ F KYG+++ V V ++ GFA +EF
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEF 327
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 173 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDA 331
TR+ V L ++ L + F+KYG+++ + GFAF+ F + A +A
Sbjct: 3 TRLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNA 59
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 30.3 bits (65), Expect = 0.36
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 331
G VYVG ++DL F + G +++V + + P GFAF+EF A+ A
Sbjct: 3 GFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRA 61
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 30.3 bits (65), Expect = 0.36
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 215 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDA 331
EDLE F ++GK+N+ + + +AFIEF+N + E A
Sbjct: 255 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQA 298
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 30.3 bits (65), Expect = 0.36
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 215 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDA 331
EDLE F ++GK+N+ + + +AFIEF+N + E A
Sbjct: 186 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQA 229
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 29.1 bits (62), Expect = 0.83
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 331
++ + EG + E ++ F ++ L V N FAFIE+E+ +E A
Sbjct: 145 LFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPA 195
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 29.1 bits (62), Expect = 0.83
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFE 307
++ L + E LE F+++ L + + N PG AF+EF+
Sbjct: 134 LFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFD 176
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 29.1 bits (62), Expect = 0.83
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAED 328
R++VGG + +L F+K+ + V + + G+ FI FE +AE+
Sbjct: 67 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEE 121
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 29.1 bits (62), Expect = 0.83
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAED 328
R++VGG + +L F+K+ + V + + G+ FI FE +AE+
Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEE 122
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +2
Query: 185 VGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 331
V L + + +++L F K G++ +++A + P GFAF+ FE+ +A A
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARA 233
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDAC 334
+Y+ L I E++ F K+G + + V G AF+ +E++ +A+ AC
Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTAC 74
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +2
Query: 161 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDA 331
+ G R++V + ++ DL F+K G + V + N GF F+ +N +A+ A
Sbjct: 96 TDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRA 155
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +2
Query: 161 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDA 331
+ G R++V + ++ DL F+K G + V + N GF F+ +N +A+ A
Sbjct: 96 TDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRA 155
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDA 331
G +YVG + + ++ L F+K GK+ + + ++P G+AF+ + N ++A A
Sbjct: 199 GHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAA 257
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEA 322
+YVGG E + ++ L F +G + ++ + ++ GF F+EF+ ++A
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDA 65
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 161 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAED 328
+ G T V V L I ++ + F+ +G++ + + ++ GFA I F N +A+
Sbjct: 123 NKGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQK 182
Query: 329 AC 334
+C
Sbjct: 183 SC 184
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 161 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAED 328
+ G T V V L I ++ + F+ +G++ + + ++ GFA I F N +A+
Sbjct: 268 NKGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQK 327
Query: 329 AC 334
+C
Sbjct: 328 SC 329
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 325
+YVG L K++ + F + G + V + L+ P GF F+E+ ++AE
Sbjct: 39 LYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAE 92
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.5 bits (58), Expect = 2.5
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSV-----WVALNPPGFAFIEFENLQEAEDA 331
+YVGGL E + + L + G + SV V N GF F+EF ++A+ A
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYA 70
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.5 bits (58), Expect = 2.5
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +2
Query: 179 VYVGGLVEGIKKEDLEREFDKYGKLNSV-----WVALNPPGFAFIEFENLQEAEDA 331
+YVGGL E + + L + G + SV V N GF F+EF ++A+ A
Sbjct: 25 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYA 80
>AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical
protein Y48G1BL.4 protein.
Length = 79
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +2
Query: 176 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAED 328
RVY+G D E F YGKL + N G +F++ +A+D
Sbjct: 3 RVYIGRFPNRASDRDAEHFFCDYGKLPDA-IMKNVFGVGCKDFQDQSDADD 52
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Frame = -2
Query: 309 FSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTR--------PPTYTRVPPEL 160
FS P +A+ + FS L+N+ + S+ +P++ PPT RVPP++
Sbjct: 2 FSRRTTPSPSITTASSSTFSISNLTNNNATSTSDLPASAISNIVPQIPPTPRRVPPKI 59
>U88175-6|AAB42283.1| 234|Caenorhabditis elegans Hypothetical
protein F21F3.6 protein.
Length = 234
Score = 26.6 bits (56), Expect = 4.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 216 SFLIPSTRPPTYTRVPPEL 160
+F + TRPP YTR+P ++
Sbjct: 210 AFAVDFTRPPPYTRLPTDV 228
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = +2
Query: 170 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDA 331
G VY+ + K LE F +YG + SV + +P GFA I F++ A A
Sbjct: 24 GQTVYLTHVKWVTGKSQLEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKA 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,420,701
Number of Sequences: 27780
Number of extensions: 129692
Number of successful extensions: 502
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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