Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0045
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    33   0.018
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    30   0.17 
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    30   0.17 
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    29   0.51 
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   3.6  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   4.7  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   6.3  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   8.3  

>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 33.5 bits (73), Expect = 0.018
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = +3

Query: 24  FLTLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQWISY 203
           F  +IT      F F+       +  A    +G+ L +++ CG + PV+ +    +WI+Y
Sbjct: 548 FTIVITFCMSAVFRFIALLSTTAEIAALIGGIGA-LVLIIFCGAVMPVQYIGWWFRWIAY 606

Query: 204 ILPLTKSTESL 236
             P+    ES+
Sbjct: 607 ANPVNYGYESI 617


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +3

Query: 57   TFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQWISYILPLTKSTESL 236
            TFG  V+  C   +TA+ +    F  ++   G++ P   +     W+  + P T   E L
Sbjct: 1352 TFGQAVASACPNAQTASVVNSLLFTFVITFNGVLQPNSNLVGFWHWMHSLTPFTYLIEGL 1411

Query: 237  RSMLQRG 257
             S L  G
Sbjct: 1412 LSDLVHG 1418


>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 187 YSGSATFFRLRNLQSLSDRCYR-EVGLSMYPLSTLDSYQP 303
           YSG ATF RL N++ LS R    ++     P  T  SY+P
Sbjct: 40  YSGIATFGRLENVECLSKRSEDFDIAFIGMPFDTGTSYRP 79


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 491 HFKIELITIKNRFQIYSTGLIRNMTAFRDNINTEYKVCSDL 369
           H K+E +T K   +++S  L  N +     IN EYKV   L
Sbjct: 183 HEKLENLTPKQLKEVFSQFLFNNQSKSSLKINLEYKVIKHL 223


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 110 VSSCSVGVTNTGHDETKSHSTQSSDQCE 27
           +S CS+G   T H  + S+S+ S  Q E
Sbjct: 154 LSGCSIGPVRTNHSSSLSNSSNSLLQTE 181


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 464  KNRFQIYSTGLIRNMTAFRDNINTEYKV 381
            K R+ I +T L +N+T F D I ++  +
Sbjct: 2023 KERYDIIATPLFQNLTEFNDLIKSKVAI 2050


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 334 VFYYLNLRKANLRSEHTLYSVLILSRKAVMFLI 432
           +F  LNLR A++ + HTL    +L      FL+
Sbjct: 423 LFRMLNLRIASMGNNHTLLEKCLLITNHATFLV 455


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 204 ILPLTKSTESLRSMLQRGWTINV 272
           ILP+ + T++L  +  RG+T+N+
Sbjct: 318 ILPIAEYTKTLDLIFHRGFTVNL 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,544
Number of Sequences: 5004
Number of extensions: 45009
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)