Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0045
(494 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40934-4|AAA81682.1| 873|Caenorhabditis elegans Vacuolar h atpa... 34 0.065
AB055110-1|BAB62291.1| 873|Caenorhabditis elegans VHA-5 protein. 34 0.065
Z92796-5|CAB07233.1| 518|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z99169-1|CAB16306.2| 966|Caenorhabditis elegans Hypothetical pr... 28 3.2
AB055112-1|BAB62293.1| 966|Caenorhabditis elegans VHA-7 protein. 28 3.2
Z50872-8|CAA90758.1| 865|Caenorhabditis elegans Hypothetical pr... 28 4.3
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 28 4.3
AL031269-3|CAA20334.1| 865|Caenorhabditis elegans Hypothetical ... 28 4.3
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 28 4.3
AB055111-1|BAB62292.1| 865|Caenorhabditis elegans VHA-6 protein. 28 4.3
Z81041-11|CAJ90515.1| 713|Caenorhabditis elegans Hypothetical p... 27 5.7
Z81041-10|CAB02785.3| 743|Caenorhabditis elegans Hypothetical p... 27 5.7
AL132904-3|CAB60972.1| 718|Caenorhabditis elegans Hypothetical ... 27 7.5
Z81492-3|CAB04030.1| 382|Caenorhabditis elegans Hypothetical pr... 27 9.9
AC024817-45|AAF59574.3| 432|Caenorhabditis elegans Hypothetical... 27 9.9
>U40934-4|AAA81682.1| 873|Caenorhabditis elegans Vacuolar h atpase
protein 5 protein.
Length = 873
Score = 33.9 bits (74), Expect = 0.065
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +3
Query: 27 LTLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQWISY 203
L++I G+ MTFG ++S T + F+P +L G I+ + +IL+W+ +
Sbjct: 546 LSVILGISQMTFGVILSFFNHTYNKSKIDIFTVFIPQMLFMGCIFMYLCLQIILKWLFF 604
>AB055110-1|BAB62291.1| 873|Caenorhabditis elegans VHA-5 protein.
Length = 873
Score = 33.9 bits (74), Expect = 0.065
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +3
Query: 27 LTLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQWISY 203
L++I G+ MTFG ++S T + F+P +L G I+ + +IL+W+ +
Sbjct: 546 LSVILGISQMTFGVILSFFNHTYNKSKIDIFTVFIPQMLFMGCIFMYLCLQIILKWLFF 604
>Z92796-5|CAB07233.1| 518|Caenorhabditis elegans Hypothetical
protein H25K10.6 protein.
Length = 518
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1
Query: 187 YSGSATFFRLRNLQSLSDRCYREVGLSMYPLSTLDSYQP 303
Y SA F LRN+ +S R YREV + PL +L Y P
Sbjct: 443 YLKSAYFPNLRNI--ISRRSYREVIVHKNPLLSLPYYYP 479
>Z99169-1|CAB16306.2| 966|Caenorhabditis elegans Hypothetical
protein C26H9A.1 protein.
Length = 966
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = +3
Query: 30 TLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQWISY 203
++I G+ MTFG +S + + + +F+P V+ I+ + +I++WI +
Sbjct: 612 SVIIGITQMTFGVFLSVLNHIHFKSYIDIISNFIPQVIFLSCIFIYLCIQIIVKWIFF 669
>AB055112-1|BAB62293.1| 966|Caenorhabditis elegans VHA-7 protein.
Length = 966
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = +3
Query: 30 TLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQWISY 203
++I G+ MTFG +S + + + +F+P V+ I+ + +I++WI +
Sbjct: 612 SVIIGITQMTFGVFLSVLNHIHFKSYIDIISNFIPQVIFLSCIFIYLCIQIIVKWIFF 669
>Z50872-8|CAA90758.1| 865|Caenorhabditis elegans Hypothetical
protein VW02B12L.1 protein.
Length = 865
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 30 TLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQWI-SYI 206
+++ G+ M FG ++S + + + F+P L G I+ + ++++WI Y+
Sbjct: 556 SILLGISQMAFGIMLSLMNHIGNRSVVDIVFVFIPQCLFLGCIFVYLCLQVLMKWIFFYV 615
Query: 207 LP 212
P
Sbjct: 616 KP 617
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 233 SQIDATERLDYQCTHCLLWIHINRNLDSYLFDHK 334
S I A ++C C L + N +L+S++ DH+
Sbjct: 1546 SSISAGREKKFKCQKCSLAFYTNGSLESHMRDHR 1579
>AL031269-3|CAA20334.1| 865|Caenorhabditis elegans Hypothetical
protein VW02B12L.1 protein.
Length = 865
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 30 TLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQWI-SYI 206
+++ G+ M FG ++S + + + F+P L G I+ + ++++WI Y+
Sbjct: 556 SILLGISQMAFGIMLSLMNHIGNRSVVDIVFVFIPQCLFLGCIFVYLCLQVLMKWIFFYV 615
Query: 207 LP 212
P
Sbjct: 616 KP 617
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 233 SQIDATERLDYQCTHCLLWIHINRNLDSYLFDHK 334
S I A ++C C L + N +L+S++ DH+
Sbjct: 1546 SSISAGREKKFKCQKCSLAFYTNGSLESHMRDHR 1579
>AB055111-1|BAB62292.1| 865|Caenorhabditis elegans VHA-6 protein.
Length = 865
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 30 TLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQWI-SYI 206
+++ G+ M FG ++S + + + F+P L G I+ + ++++WI Y+
Sbjct: 556 SILLGISQMAFGIMLSLMNHIGNRSVVDIVFVFIPQCLFLGCIFVYLCLQVLMKWIFFYV 615
Query: 207 LP 212
P
Sbjct: 616 KP 617
>Z81041-11|CAJ90515.1| 713|Caenorhabditis elegans Hypothetical
protein C27A7.3b protein.
Length = 713
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 212 AYEIYRVSQI-DATERLDYQCTHCLLWIHINRNLDSYLFD 328
A E Y+ I A +RL HCL W+ N+ Y+ D
Sbjct: 133 AKEFYQAEPIWSAYKRLTGNRVHCLFWVGCYYNITGYMPD 172
>Z81041-10|CAB02785.3| 743|Caenorhabditis elegans Hypothetical
protein C27A7.3a protein.
Length = 743
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 212 AYEIYRVSQI-DATERLDYQCTHCLLWIHINRNLDSYLFD 328
A E Y+ I A +RL HCL W+ N+ Y+ D
Sbjct: 163 AKEFYQAEPIWSAYKRLTGNRVHCLFWVGCYYNITGYMPD 202
>AL132904-3|CAB60972.1| 718|Caenorhabditis elegans Hypothetical
protein Y111B2A.3 protein.
Length = 718
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 170 RYAPDSTVDQLHSSAYEIYRVSQIDATERLDYQCTHCLLWIHINRNLDSY 319
RY P+ +S+ +E Q+ T+ L+ H LW RN+D +
Sbjct: 636 RYKPNEINGSRNSARHEREVRKQVALTKSLEMAQLHRNLWAESERNMDHW 685
>Z81492-3|CAB04030.1| 382|Caenorhabditis elegans Hypothetical
protein E03H4.6 protein.
Length = 382
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 494 QHFKIELITIKNRFQIYSTGLIRNMTAFRDN 402
+H++ + + +Q+YS G+I+N+T + DN
Sbjct: 347 EHYEGVAKALNDYYQVYSQGIIKNLT-YTDN 376
>AC024817-45|AAF59574.3| 432|Caenorhabditis elegans Hypothetical
protein Y54G2A.4 protein.
Length = 432
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 111 LALGSFLPMVLLCGIIWPVEG 173
L G FL + CGI WP G
Sbjct: 331 LVFGGFLVFEMCCGIFWPSMG 351
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,916,612
Number of Sequences: 27780
Number of extensions: 252312
Number of successful extensions: 617
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -