Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0045
         (494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   0.77 
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    21   7.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.5  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 166 TGHMMPQSNTIGRNEPRAR*VAVLSVSQTQDTTKPKVIPHNPVISVRNV 20
           T  M P  + +    PR +   +  +     + +P+VI  NPV SV  V
Sbjct: 548 TAKMGPSYDPMAVVSPRLKVHGIRGLRVADASVQPQVISGNPVASVNMV 596


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 33  LITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLL 146
           L  G  G+  GF +  V D     T      F+ M+L+
Sbjct: 98  LAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILI 135


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = -1

Query: 182 QVHTFNGPYDAAK*HHRQERAKSQVSSCSVGVTNTGHD 69
           Q HT     D    H   E+  +     SV  TNTG D
Sbjct: 274 QDHTLEKSNDYYAFHFEGEKGPNSQGPSSVIDTNTGVD 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,460
Number of Sequences: 438
Number of extensions: 3181
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)