Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0043
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    26   4.5  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    26   4.5  
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    26   4.5  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    26   6.0  
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com...    25   7.9  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   7.9  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   7.9  

>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 384 DVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSVEG 494
           D  F     V + VQ P T  +AK F P + K S EG
Sbjct: 208 DPRFTDPRTVFEEVQEPVTNVDAKVFHPEKRKRSREG 244


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
 Frame = +3

Query: 312 WLKNNPEFLEAFLYWIDEILQSHNDVYFVTMTQVIQWVQNPRT--VTEAKNFEPWREKCS 485
           W++    F+E FL + D  +Q     +++   QV   V    T  V E +   P+  + +
Sbjct: 545 WVEKIVSFIEQFLNFQDMEIQRRASEFYILFNQVSDIVNTSDTMEVLELQKKPPYIVQNT 604

Query: 486 VE----GNPACWVPHSCKLTSKEVPGETINLQTCLRCPVN 593
           +     G P    P + K   K +P E ++    L CP+N
Sbjct: 605 MYKLFFGEPL--NPVAVKAQRKVMPDENLD----LNCPIN 638


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 530 HFKGSSRRNHQFTNLFEMPSQLPL 601
           HF+ S++ N   T+LFE  S+L L
Sbjct: 154 HFEASAKENTNVTDLFETVSRLAL 177


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = +2

Query: 368 PSKPQRRLLRYHDTSDPMGTKPTYRD*SQELRAVERKVLRRRKPCMLGTSFLQAHFKGSS 547
           P  P + +   HD  + + T   + D   +L    R+ LRR     L  S L      ++
Sbjct: 260 PWPPNQHIKFAHDDKNVVSTDFIHPDWQYKLERARRRALRRAANATLLNSHLLETGPANA 319

Query: 548 RRNHQFTNLFEMPS 589
             NH  T+L   P+
Sbjct: 320 NANHN-TDLSHDPT 332


>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
           complex anchor subunit Tim18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +3

Query: 321 NNPEFLEAFLYWIDEILQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSVEGNP 500
           N+P    +F ++ + +LQ+   +  +   +++  V++  T + AK F P  +      N 
Sbjct: 13  NSPTTTTSFSWFTNNMLQTRLGLGALRQGRLLFAVKSFSTTSVAKIFPPPPQTIKGTVND 72

Query: 501 ACWVPHSCKL 530
           A   PH  KL
Sbjct: 73  AAVFPHHSKL 82


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 35  SLALHHVL*DAPPMPRKPSEL 97
           S+AL H     PP P  PSEL
Sbjct: 331 SMALEHEYFTTPPYPANPSEL 351


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 513 PHSCKLTSKEVPGETINLQTCLRCP 587
           P+S  +TS   PGE +N    L+ P
Sbjct: 329 PYSFPITSSVHPGEDVNFTVALKVP 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,260,657
Number of Sequences: 5004
Number of extensions: 73642
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)