Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0043
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0275 - 24084328-24084564,24084660-24084995                       29   2.7  
12_01_0301 - 2280215-2281154,2281271-2281338                           29   4.7  
11_06_0280 + 21875166-21875470,21876450-21876645,21878270-21878887     28   6.2  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    28   6.2  
12_01_0466 + 3649500-3649635,3649925-3650520                           28   8.2  

>04_04_0275 - 24084328-24084564,24084660-24084995
          Length = 190

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +3

Query: 264 HYEQNRAPLGLYFHAAWLKNNPEFLEAFLYWIDEI-LQSHNDVYFVTMTQVIQWVQNPRT 440
           HY+    P G+     W K+ P  L   +   DE   Q  + +Y+ T  Q     +  R 
Sbjct: 85  HYDPKACPYGVLLDVFWAKHRPTTL---IRQGDEAGTQYRSGIYYYTAEQ----ERVARE 137

Query: 441 VTEAKNFEPWREKCSVEGNPA 503
             EAK  E W+EK   E  PA
Sbjct: 138 SLEAKQ-EEWKEKIVTEILPA 157


>12_01_0301 - 2280215-2281154,2281271-2281338
          Length = 335

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 258 DRHYEQNRAPLGLYFHAAWLKNNPEFLEAFLYWIDEILQS 377
           D  +E N+A +G++FH     +N  F++AF +  +  LQ+
Sbjct: 167 DASWEHNKACIGIFFHLP-ATHNALFIKAFCHLTESPLQA 205


>11_06_0280 + 21875166-21875470,21876450-21876645,21878270-21878887
          Length = 372

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 99  PTRSHAVWEMVMNELDRREDPSNDEYLPGCAMVDSCSNI 215
           PTR  ++WE  + E D R     ++      MVD C +I
Sbjct: 177 PTRGMSMWEACLIETDIRIKVQGEDAARDLTMVDGCVDI 215


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +2

Query: 29  PPSLALHHVL*DAPPMPRKPSELPNQ---EPRSMGNGNE 136
           PP L  H VL   PP P  PS LPN+    P + G GN+
Sbjct: 624 PPPLPNHSVLPPPPPPPPPPS-LPNRLVPPPPAPGIGNK 661


>12_01_0466 + 3649500-3649635,3649925-3650520
          Length = 243

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 521 LQAHFKGSSRRNHQFTNLFEMPSQLPLVKRPHGRWP 628
           LQ H +   +R    T LFE+  QL L   P G  P
Sbjct: 151 LQLHLRAEPKRGRPGTGLFELGLQLHLWAEPKGDRP 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,073,923
Number of Sequences: 37544
Number of extensions: 518866
Number of successful extensions: 1381
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)