Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0043
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 48 1e-05
SB_7303| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_43341| Best HMM Match : N_methyl (HMM E-Value=6.4) 29 4.8
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17) 28 6.3
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15) 28 8.4
SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016) 28 8.4
SB_52653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +3
Query: 408 QVIQWVQNPRTVTEAKNFEPWREKCSVEGNPACWVPHSCKLTSKEVPGETINLQTCLRCP 587
QVI+W++NP+ V A F W C P C P+ C T+ + + TC CP
Sbjct: 465 QVIEWMKNPQDVNGANGFPAW--DCLTRPKPRCTTPNVCHYTTP----QDFYMPTCSDCP 518
Query: 588 VNYPWLNDPTGD 623
++P +P G+
Sbjct: 519 KHFPSPTNPDGE 530
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 27 NPPLWPYTMYFRMPHRCHGNLQSCPTRSH-AVWEMVMNELDRREDPSNDEYLPGCAMVDS 203
NPP++PYT+ +R C + CP S+ +W V+ +D + N + G AM+D+
Sbjct: 248 NPPMYPYTLDYRSIQDC--PVGKCPVMSYPGLW--VVPNIDLMDGNGN---VCG-AMMDA 299
Query: 204 CS 209
C+
Sbjct: 300 CN 301
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 47.6 bits (108), Expect = 1e-05
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +3
Query: 375 SHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSVEGNPACW 509
S DVYFVT++Q I+W++ P + + K F PW +C PA W
Sbjct: 818 SQGDVYFVTVSQAIEWIKTPTPLEKIKTFAPW--QCDKPAPPAPW 860
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 3 TRITAPLSNPPLWPYTMYFRMPHRCHGNLQSCPT 104
T + +NPPLWPYT+ + C + CPT
Sbjct: 728 TSMPTQQNNPPLWPYTLEYASTQEC--VIPPCPT 759
>SB_7303| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +3
Query: 252 NFDRHYEQNRAPLGLYFHAAWLKNNPEFLEAFLYWIDEILQSHNDVYFVTMTQ 410
NF HY N+AP GL+ H+AW + +EA ++ ++ S +DV+ +T++Q
Sbjct: 5 NFQYHYHSNKAPFGLHAHSAWFSQSTGHMEALRKFL-TLVASRDDVWVLTVSQ 56
>SB_43341| Best HMM Match : N_methyl (HMM E-Value=6.4)
Length = 247
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = -1
Query: 474 LSTARSSWLQSRYVGFVPIGSLVSW*RSKRRCGFEGSRLSNTRKLPKIQGCFSTKLHGNK 295
++T S W +S+ + V+ R C F S+ + + LP I+G FS +
Sbjct: 20 IATTESIW-KSKVIRLPRESDAVTTKREFAFCAFVSSKTTFPQNLPYIEGVFSDTCFALR 78
Query: 294 VLKVLGSVRNDGQS 253
+L GS +S
Sbjct: 79 LLDTTGSTTQQFKS 92
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 402 MTQVIQWVQNPRTVTEAKNFEPWREKCSVEGNPACWVPHSCKLTSKEVPG 551
+ QVI + ++P ++ P+ +V G P C +C TSK V G
Sbjct: 3934 LVQVIIFGRDPCYASDCAEKRPYSTCQAVNGQPTCVCNKNCPSTSKPVCG 3983
>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
Length = 1860
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 93 SCPTRSHAVWEMVMNELDRREDPSNDEYLPGC 188
SC T S+ + + ++N +DR P +D YL C
Sbjct: 1113 SCLTWSNLISQELLNSIDRTIKPCDDFYLYAC 1144
>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
Length = 1724
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 502 AGFPSTEHFSLHGSKFLASVTVRGFCTHWITCVM 401
AG P+T HF LHG+ +++ G T +T +M
Sbjct: 1132 AGPPNTSHFGLHGASTISTTLTPGQST-TLTIIM 1164
>SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016)
Length = 702
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Frame = +2
Query: 518 FLQAHFKGSSRRNHQFTNLFEMPSQLPLVK----RPHGRWPLLRSHDLEPH 658
F +AHF+ + + F P Q P + PH + P R+ EPH
Sbjct: 329 FSEAHFQSPTSNSLFQRPTFRAPHQTPFFRAPLSEPHSQSPTFRAPQSEPH 379
>SB_52653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 369
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Frame = +3
Query: 402 MTQVIQWV-QNPR---TVTEAKNFEPWREK 479
+ ++ QW+ QNPR ++ +N+EPW E+
Sbjct: 151 LKEIDQWLNQNPREIVVISFTRNYEPWNER 180
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,945,268
Number of Sequences: 59808
Number of extensions: 579145
Number of successful extensions: 1564
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1561
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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