Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0042
(642 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000DB6DAF Cluster: PREDICTED: similar to CG10955-PA... 79 9e-14
UniRef50_Q28XT6 Cluster: GA10665-PA; n=1; Drosophila pseudoobscu... 70 6e-11
UniRef50_Q9W261 Cluster: RNA polymerase-associated protein Rtf1;... 66 9e-10
UniRef50_Q92541 Cluster: RNA polymerase-associated protein RTF1 ... 59 1e-07
UniRef50_UPI00005845E4 Cluster: PREDICTED: similar to Rtf1, Paf1... 49 1e-04
UniRef50_Q76IM2 Cluster: Gag-like protein; n=7; Danio rerio|Rep:... 34 2.5
UniRef50_A5FWP7 Cluster: Putative uncharacterized protein; n=1; ... 33 5.9
UniRef50_Q5CQ50 Cluster: Putative uncharacterized protein; n=2; ... 33 5.9
UniRef50_Q5ZM51 Cluster: Putative uncharacterized protein; n=3; ... 33 7.7
UniRef50_A2FLH3 Cluster: Putative uncharacterized protein; n=1; ... 33 7.7
UniRef50_Q6CB57 Cluster: Similar to KLLA0D07348g Kluyveromyces l... 33 7.7
UniRef50_Q18JA8 Cluster: Gas-vesicle operon protein gvpH; n=1; H... 33 7.7
>UniRef50_UPI0000DB6DAF Cluster: PREDICTED: similar to CG10955-PA;
n=3; Endopterygota|Rep: PREDICTED: similar to CG10955-PA
- Apis mellifera
Length = 692
Score = 79.0 bits (186), Expect = 9e-14
Identities = 50/132 (37%), Positives = 70/132 (53%)
Frame = +2
Query: 137 GKKTDDPFTRRHTKPVMNFKSQSSRSQELISNXXXXXXXXXXXXXXXXXXXXXXXXDRLE 316
GKK DDPFTRR TKP M FK + +E+ S + E
Sbjct: 579 GKKVDDPFTRRSTKPRMVFKPED---EEVSSTALVNDKVSPQQTETVTVC------NEKE 629
Query: 317 NHEEAKRSRGEHPTSSDTSLYSLHDFEINIDLDLPAAKSVSSQPKQVTTKVKETGPKRSL 496
N +E K+ + S L++ HDF+I IDL++P +V +P + +K+TGP+RSL
Sbjct: 630 NGQETKKKQ------STEDLFNAHDFDITIDLEVPIPSNVLPKP---ISNIKDTGPRRSL 680
Query: 497 NLEEYKKRHGLI 532
NLE+YKK+ GLI
Sbjct: 681 NLEDYKKKRGLI 692
Score = 56.4 bits (130), Expect = 5e-07
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +3
Query: 39 SSIQSISYINNRNRKLNVETAEKAIMEEVKANKERK 146
++I SISYIN+RNRK NVE AEKAIMEE KANK +K
Sbjct: 546 ATISSISYINDRNRKKNVEEAEKAIMEEFKANKGKK 581
>UniRef50_Q28XT6 Cluster: GA10665-PA; n=1; Drosophila
pseudoobscura|Rep: GA10665-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 764
Score = 69.7 bits (163), Expect = 6e-11
Identities = 49/132 (37%), Positives = 63/132 (47%)
Frame = +2
Query: 137 GKKTDDPFTRRHTKPVMNFKSQSSRSQELISNXXXXXXXXXXXXXXXXXXXXXXXXDRLE 316
G+K DPFTRR T+P M FK ++ +
Sbjct: 653 GQKISDPFTRRITQPRMGFKGAKKEEED------------------PQLAPLPPPPPGKK 694
Query: 317 NHEEAKRSRGEHPTSSDTSLYSLHDFEINIDLDLPAAKSVSSQPKQVTTKVKETGPKRSL 496
EA S + + D SLYSLHDF+I++D+ LP S +S PK K ET KRSL
Sbjct: 695 RPNEAGSSNAKPTDAKDFSLYSLHDFDIDLDVPLPV-NSTNSVPKPAN-KPAETVSKRSL 752
Query: 497 NLEEYKKRHGLI 532
NLE+YKK+ GLI
Sbjct: 753 NLEDYKKKRGLI 764
Score = 50.4 bits (115), Expect = 4e-05
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +3
Query: 42 SIQSISYINNRNRKLNVETAEKAIMEEVKANKERK 146
++ ISYIN+RNRK NV+ AEKAIMEE +ANK +K
Sbjct: 621 TLNLISYINDRNRKKNVQDAEKAIMEEARANKGQK 655
>UniRef50_Q9W261 Cluster: RNA polymerase-associated protein Rtf1; n=4;
Coelomata|Rep: RNA polymerase-associated protein Rtf1 -
Drosophila melanogaster (Fruit fly)
Length = 775
Score = 65.7 bits (153), Expect = 9e-10
Identities = 48/132 (36%), Positives = 60/132 (45%)
Frame = +2
Query: 137 GKKTDDPFTRRHTKPVMNFKSQSSRSQELISNXXXXXXXXXXXXXXXXXXXXXXXXDRLE 316
G K DPFTRR T+P M FK ++ +
Sbjct: 663 GLKISDPFTRRITQPRMGFKGAKKDEDDM----------------QLAPLPPPPPGKKRP 706
Query: 317 NHEEAKRSRGEHPTSSDTSLYSLHDFEINIDLDLPAAKSVSSQPKQVTTKVKETGPKRSL 496
N + S D SLYSLHDF+ IDLD+P + +S PK +K ET KRSL
Sbjct: 707 NEAGTSSASVRSTDSKDYSLYSLHDFD--IDLDVPLPVNTNSVPKP-ASKPAETVSKRSL 763
Query: 497 NLEEYKKRHGLI 532
NLE+YKK+ GLI
Sbjct: 764 NLEDYKKKRGLI 775
Score = 49.2 bits (112), Expect = 8e-05
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +3
Query: 42 SIQSISYINNRNRKLNVETAEKAIMEEVKANKERK 146
++ ISYIN+RNRK NVE AEKAI+EE +ANK K
Sbjct: 631 TLNLISYINDRNRKKNVEDAEKAILEEARANKGLK 665
>UniRef50_Q92541 Cluster: RNA polymerase-associated protein RTF1
homolog; n=40; Eumetazoa|Rep: RNA polymerase-associated
protein RTF1 homolog - Homo sapiens (Human)
Length = 670
Score = 58.8 bits (136), Expect = 1e-07
Identities = 40/127 (31%), Positives = 56/127 (44%)
Frame = +2
Query: 152 DPFTRRHTKPVMNFKSQSSRSQELISNXXXXXXXXXXXXXXXXXXXXXXXXDRLENHEEA 331
DPFTRR KP + S+ Q I D+ N + A
Sbjct: 552 DPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKSA 611
Query: 332 KRSRGEHPTSSDTSLYSLHDFEINIDLDLPAAKSVSSQPKQVTTKVKETGPKRSLNLEEY 511
S D L+ +HDF++ IDL +P+++S + K+ P+RSLNLE+Y
Sbjct: 612 S------DLSED--LFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNLEDY 663
Query: 512 KKRHGLI 532
KKR GLI
Sbjct: 664 KKRRGLI 670
Score = 34.7 bits (76), Expect = 1.9
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +3
Query: 27 RAAGSSIQSISYINNRNRKLNVETAEKAIMEEVKANKERKQTTRSR 164
R +I +ISYIN RNR+ N+ +EKA++ E K ++ +R
Sbjct: 511 RQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTR 556
>UniRef50_UPI00005845E4 Cluster: PREDICTED: similar to Rtf1,
Paf1/RNA polymerase II complex component, homolog (S.
cerevisiae); n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to Rtf1, Paf1/RNA polymerase II
complex component, homolog (S. cerevisiae) -
Strongylocentrotus purpuratus
Length = 690
Score = 48.8 bits (111), Expect = 1e-04
Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 6/133 (4%)
Frame = +2
Query: 152 DPFTRRHTKPVMNFKSQSSRSQEL--ISNXXXXXXXXXXXXXXXXXXXXXXXXDRLEN-- 319
DPFTRRH +P + K++ + L + D + +
Sbjct: 563 DPFTRRHCRPQLVTKAREDTADILKRLEEERLMQQKVEKDKKQEEELKKKMDEDIIASLT 622
Query: 320 HEEAKRSRGEHPTSSDTSLYSLHDFEINIDLDLPAAKSVSSQPKQVTTKVKET--GPKRS 493
E + S D L+ HDF+I IDLD+ S+P + +E P+RS
Sbjct: 623 QEAVPAKVTDRKVSED--LFQAHDFDIKIDLDVSIP---DSRPMSAINEEREPVGAPRRS 677
Query: 494 LNLEEYKKRHGLI 532
LNL+EYKK GLI
Sbjct: 678 LNLDEYKKMRGLI 690
Score = 34.3 bits (75), Expect = 2.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 27 RAAGSSIQSISYINNRNRKLNVETAEKAIMEEVK 128
R + +I+YIN RNR N+ +E A+ EE+K
Sbjct: 522 RIRNREVNAITYINQRNRNRNIAESEVAMKEEIK 555
>UniRef50_Q76IM2 Cluster: Gag-like protein; n=7; Danio rerio|Rep:
Gag-like protein - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 423
Score = 34.3 bits (75), Expect = 2.5
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 320 HEEAKRSRGEHPTSSDT-SLYSLHDFEINIDLDLPAAKSVSSQPKQVTTKVKETGPKRSL 496
+E AKR G+ P +DT S + ++ L L S + ++ T +K+T R++
Sbjct: 312 NERAKRGAGDEPGQTDTESERDFSECSVSFSLPLSGYSSKNYTAHEIKTFLKDTKNARNI 371
Query: 497 NLEEY 511
+E+Y
Sbjct: 372 RIEQY 376
>UniRef50_A5FWP7 Cluster: Putative uncharacterized protein; n=1;
Acidiphilium cryptum JF-5|Rep: Putative uncharacterized
protein - Acidiphilium cryptum (strain JF-5)
Length = 1119
Score = 33.1 bits (72), Expect = 5.9
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = -1
Query: 531 MSPCLFLYSSRLSERLGPVSLTFVVTCFGWLDTDFAAGRSRSMLISKSCSEYRLVSLDVG 352
+SP LF L+ + G + + F+V GW D AA ++S L+ + +L SL
Sbjct: 1051 ISPFLFSLDKDLANKTGTMLVNFLVNAIGWEGLD-AAVSNQSSLLEIGFTIEQLKSLRKL 1109
Query: 351 CSPRDL 334
C P L
Sbjct: 1110 CDPNGL 1115
>UniRef50_Q5CQ50 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 257
Score = 33.1 bits (72), Expect = 5.9
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +3
Query: 48 QSISYINNRNRKLNVETAEKAIMEEVKANKERKQTTRSRG 167
Q S + +R K +E + K +EE++ANKER+Q +S+G
Sbjct: 129 QVSSGVFDRGSKEALEASNKTKIEELRANKEREQALQSQG 168
>UniRef50_Q5ZM51 Cluster: Putative uncharacterized protein; n=3;
Gallus gallus|Rep: Putative uncharacterized protein -
Gallus gallus (Chicken)
Length = 1005
Score = 32.7 bits (71), Expect = 7.7
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -1
Query: 201 CDLKFMTGLVCRLVNGSSVFFPYSL*PPP**LSRR--FQRSASGSCC*CTRC 52
CDL G +C++ GS + FP+ L + F R GS C RC
Sbjct: 926 CDLCTQRGFICQICGGSDIIFPFQLDSTARCKDCKTVFHRECYGSTASCPRC 977
>UniRef50_A2FLH3 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1476
Score = 32.7 bits (71), Expect = 7.7
Identities = 15/69 (21%), Positives = 35/69 (50%)
Frame = +2
Query: 317 NHEEAKRSRGEHPTSSDTSLYSLHDFEINIDLDLPAAKSVSSQPKQVTTKVKETGPKRSL 496
+H+E ++ E + + + + I ID ++ +K + + Q+ + +E PK+ +
Sbjct: 608 SHKEDEKKVDEEIKQKNAT--KIEEKNIKIDEEVNKSKEIEKENDQIIEEFEEEKPKKEM 665
Query: 497 NLEEYKKRH 523
+EE K+H
Sbjct: 666 KIEEENKQH 674
>UniRef50_Q6CB57 Cluster: Similar to KLLA0D07348g Kluyveromyces
lactis IPF 4914.1; n=1; Yarrowia lipolytica|Rep: Similar
to KLLA0D07348g Kluyveromyces lactis IPF 4914.1 -
Yarrowia lipolytica (Candida lipolytica)
Length = 967
Score = 32.7 bits (71), Expect = 7.7
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 12 ELVDPRAAGSSIQ-SISYINNRNRKLNVETAEKAIMEEVKANKERKQTTRSRGDTPSPS* 188
EL P+ S Q ++S +NRN ++E+ ++ ++ EV++ E+K+T + DT + S
Sbjct: 676 ELSSPQFRNSPSQVALSNWSNRNSVASMESGDEGVIGEVESVAEKKETDKEVVDTVAQSD 735
Query: 189 T 191
T
Sbjct: 736 T 736
>UniRef50_Q18JA8 Cluster: Gas-vesicle operon protein gvpH; n=1;
Haloquadratum walsbyi DSM 16790|Rep: Gas-vesicle operon
protein gvpH - Haloquadratum walsbyi (strain DSM 16790)
Length = 221
Score = 32.7 bits (71), Expect = 7.7
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 308 RLENHEEAKRSRGEHPTSSDTSLYSLHDFEINIDLDLPAAK 430
++E HE+ +RSRG TS S+ +D I ID L K
Sbjct: 52 QIEQHEDGRRSRGGTATSGQLSIDYDYDISIGIDSHLQTEK 92
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 512,660,589
Number of Sequences: 1657284
Number of extensions: 8521872
Number of successful extensions: 31379
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 30046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31355
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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