Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0042
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    29   0.43 
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    29   0.57 
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    26   5.3  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   9.3  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   9.3  
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni...    25   9.3  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   9.3  

>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 359 SSDTSLYSLHDFEINIDLDLPAAKSVSSQPKQVTTKVKETGPKR 490
           S  +S  S H FE+++ +     KS +   K  T+K K   PKR
Sbjct: 716 SEPSSAVSTHSFEVHLSMPGTQIKSANLAEKMETSKHKVFNPKR 759


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 72  RNRKLNVETAEKAIMEEVKANKERKQTTRSRGDTPSPS 185
           R +KL  E A++A   + KA +E+KQ  R      SPS
Sbjct: 655 REQKLEEERAKQAKKAQAKAEQEKKQVERVMKGKTSPS 692


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +3

Query: 42  SIQSISYINNRNRKLNVETAEKAIMEEVKANKERKQTTRSR 164
           S+ +IS I + N  L+VET  K IM+E +  +E+    RSR
Sbjct: 593 SMPNISNIVSTNH-LDVETQMKLIMDENQRLREQIAVLRSR 632


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -1

Query: 639 QLNFT-FVLIIFTNSKHTGW 583
           +LN+T F  II  + KHTGW
Sbjct: 119 ELNYTAFYKIIKKHDKHTGW 138


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -1

Query: 522 CLFLYSSRLSERLGP----VSLTFVVTCFGWLDTDFAAGRSRSML 400
           CL LYS+   +R  P    +SLT++V C G L T     R+R  L
Sbjct: 240 CLNLYSAA-PDRTNPQPQFLSLTYMVFCLGTLFTSPVLVRNRYSL 283


>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
           Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +2

Query: 419 PAAKSVSSQPKQVTTKVKETGPKRSL--NLEEYKK 517
           P  KSV++ PKQ   +  +  P   L  N + YKK
Sbjct: 36  PIPKSVANSPKQTGNETPDETPSTPLSNNKKRYKK 70


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +2

Query: 335 RSRGEHPTSSDTSLYSLHDFEINIDLDLPAAK-SVSSQPKQVT-TKVKETGPKRSLNLEE 508
           + +G+H + S       +D   N++ DLP    S+SS+ ++ + TK  +   +R   L E
Sbjct: 765 KRKGQHNSFSYDKSTLFYDNNNNLEEDLPDVNISISSRNEEASKTKPFDDRQQRLQQLVE 824

Query: 509 YKKR 520
            +KR
Sbjct: 825 KRKR 828


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,492
Number of Sequences: 5004
Number of extensions: 31971
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)