Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0042
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0180 + 20962420-20962528,20962618-20962699,20962831-209629...    29   2.4  
11_06_0155 - 20712601-20713553,20713618-20714000,20714240-207142...    29   2.4  
11_02_0040 - 7665220-7666656                                           29   2.4  
11_06_0179 + 20952070-20955228                                         29   4.1  
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    28   7.2  
11_06_0181 + 20985960-20987825,20987904-20989169                       27   9.6  
03_05_0348 - 23346182-23348022,23348118-23348148                       27   9.6  

>11_06_0180 +
           20962420-20962528,20962618-20962699,20962831-20962948,
           20963024-20963062,20963181-20963343,20963706-20963921,
           20964039-20964116,20964244-20964500,20964544-20964575,
           20964815-20965197,20965262-20965831,20966250-20966343,
           20966365-20966541,20966761-20966963,20968244-20968301,
           20969126-20969381,20969553-20969789
          Length = 1023

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 196 FKVHDGLGVSPRERVVCFLSLFALTSSMIAFSAVSTFSFRF 74
           F V+DG+ V P  R+  F+SLFA      A    S+   RF
Sbjct: 540 FSVNDGITVIPLVRIKGFVSLFAAAKDKSAVVIASSELLRF 580


>11_06_0155 -
           20712601-20713553,20713618-20714000,20714240-20714271,
           20714315-20714571,20714699-20714724,20714894-20715081,
           20715302-20715595,20715714-20715752,20715827-20715944,
           20716076-20716157,20716610-20716668,20717156-20717221,
           20717358-20717447,20718142-20718236
          Length = 893

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 196 FKVHDGLGVSPRERVVCFLSLFALTSSMIAFSAVSTFSFRF 74
           F V+DG+ V P  R+  F+SLFA      A    S+   RF
Sbjct: 624 FSVNDGITVIPLVRIKGFVSLFAAAKDKSAVVIASSELLRF 664


>11_02_0040 - 7665220-7666656
          Length = 478

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 514 EEARAHLSVAIPPRPSARPP 573
           E ARA L+ A PP P++RPP
Sbjct: 189 EIARARLTTAAPPPPTSRPP 208


>11_06_0179 + 20952070-20955228
          Length = 1052

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 196 FKVHDGLGVSPRERVVCFLSLFALTSSMIAFSAVSTFSFRF 74
           F V+DG+ V P  R+  F+SLFA          VS+   RF
Sbjct: 660 FSVNDGITVVPLVRIKGFVSLFAAAKDKSTNVIVSSELLRF 700


>07_03_0481 -
           18572206-18574314,18574591-18575185,18575304-18575371,
           18577344-18577458,18578179-18578333,18578673-18580621,
           18580691-18581372,18581550-18581621,18582558-18583199,
           18583301-18583402,18585011-18585100
          Length = 2192

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 72  RNRKLNVETAEKAIMEEVKANKERKQTTRSRGDTPSPS 185
           R +K++++  + A  +  K  + R+  T +  D+PSPS
Sbjct: 77  RTKKVSLKLLDNADADTSKRERTRRMRTSTTSDSPSPS 114


>11_06_0181 + 20985960-20987825,20987904-20989169
          Length = 1043

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 184 DGLGVSPRERVVCFLSLFALTSSMIAFSAVS 92
           DG+ VSP  R+  F+SLFA   +   FS  S
Sbjct: 724 DGVTVSPLVRIAGFVSLFAKVKNESCFSISS 754


>03_05_0348 - 23346182-23348022,23348118-23348148
          Length = 623

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 146 FSFLIRFDLLHDSFLGGFNVQLPVPVVDVRDALYGRACS 30
           F ++ R   L+  F G  N    V +VD  + LYG + S
Sbjct: 461 FQYVKRIKSLNSQFAGASNTASKVNIVDWAEKLYGHSIS 499


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,597,256
Number of Sequences: 37544
Number of extensions: 261062
Number of successful extensions: 988
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)