Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0042
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.7  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 362 SDTSLYSLHDFEINI-DLDLPAAKSVSSQPKQVTT 463
           SD S YS  D ++   DLDL   + +SS P Q ++
Sbjct: 291 SDYSDYSYLDEKLERNDLDLEKYEGISSTPSQASS 325


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 532 LSVAIPPRPSAR 567
           LSV+IPP PSA+
Sbjct: 760 LSVSIPPPPSAQ 771


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 352 PHVQRHQPVLAARLRN 399
           P VQ+HQPV   R  N
Sbjct: 253 PTVQQHQPVTVNRQLN 268


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 547 PPRPSARPPDWEPSG 591
           PP PS  PP   P G
Sbjct: 39  PPNPSQGPPPGGPPG 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,745
Number of Sequences: 438
Number of extensions: 2487
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)