Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0041
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   1.5  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   2.0  
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc...    24   6.3  

>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +2

Query: 83  VILLLSP--RHVS*LFCASGCSAQWKYQY-NIGC 175
           + L+ SP  R+    FC + C ++W+ QY  +GC
Sbjct: 157 IALMPSPPSRNEQPAFCVNWCPSRWREQYIAVGC 190


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 105 VTCLDCSVPVDVQLSGNINIISDARXVXNVNSF 203
           V+    SVPVDV ++ ++NI S +    + N F
Sbjct: 112 VSAFTVSVPVDVDVASHVNISSPSAPSLSDNLF 144


>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 138 HPLAQNSQDT*RGDNKRITIL*VTSVC 58
           HPL  ++++   GD +R T+L V + C
Sbjct: 115 HPLIWSNRNLREGDVRRATVLDVIAKC 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,008,012
Number of Sequences: 5004
Number of extensions: 14589
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)