Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0041
         (314 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0335 + 22117902-22119869                                         27   3.1  
12_02_1062 - 25763269-25764141                                         27   4.1  
06_03_0267 + 18970578-18972464                                         26   5.4  
04_04_1322 + 32640414-32642327                                         26   5.4  

>02_04_0335 + 22117902-22119869
          Length = 655

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 11  PGCRNSARGRRSCVLK 58
           PGC  SARGR  C +K
Sbjct: 470 PGCGKSARGRTDCCVK 485


>12_02_1062 - 25763269-25764141
          Length = 290

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 96  CRRVTCLDCSVPVDVQL 146
           CR  T  DCSVPV+  L
Sbjct: 127 CRNATSSDCSVPVETML 143


>06_03_0267 + 18970578-18972464
          Length = 628

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 11  PGCRNSARGRRSCVLK 58
           PGC  SARGR  C ++
Sbjct: 452 PGCTKSARGRTDCCVR 467


>04_04_1322 + 32640414-32642327
          Length = 637

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 11  PGCRNSARGRRSCVLK 58
           PGC  SARGR  C ++
Sbjct: 442 PGCTKSARGRTDCCVR 457


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,915,635
Number of Sequences: 37544
Number of extensions: 100620
Number of successful extensions: 170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)