Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0041
         (314 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51639| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.45 
SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.8  
SB_3591| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.4  
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            26   7.4  
SB_17747| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  

>SB_51639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 111 CLDCSVPVDVQLSGNINIISDAR 179
           C DCS P++ +L G  N I D R
Sbjct: 52  CADCSAPIETELQGVRNYIDDIR 74


>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -3

Query: 42 RLPRAEFLQPGDPL 1
          R+ R EFLQPGDPL
Sbjct: 28 RVDRIEFLQPGDPL 41


>SB_3591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1585

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +2

Query: 2   SGSPGCRNSARGRRSCVLKQTDVTHKIVILLLSPRHVS*LFCASGCSAQWKYQYNIGCAR 181
           +G+ GC++ +  +R+C   Q    + IV+ + SP  +       GC   W    N GC +
Sbjct: 833 AGTTGCKHESERKRAC---QKIQINNIVLDIRSPGMIH----KDGCDFAWYLSDNNGCKK 885


>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 31  TRETIVCP*TNRRNSQNSYSFIVAASRVLT 120
           T+E +VC  TN  N Q  Y      SR ++
Sbjct: 648 TKEDLVCKDTNMANRQKGYGMTAELSRKMS 677


>SB_17747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 69  TSVCLRTHDRLPRAEFLQPGDPL 1
           TSV L   +RL R+    PGDPL
Sbjct: 43  TSVTLFIENRLMRSNSCSPGDPL 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,013,242
Number of Sequences: 59808
Number of extensions: 124791
Number of successful extensions: 339
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)