Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0040
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    27   2.7  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   2.7  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    26   4.7  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   4.7  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   4.7  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    25   8.1  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       25   8.1  

>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 179 WCKPTVTLNSSLSPAAERTYVLALPYIARTSRWYFPGTPFTFMLHHKTSR 328
           W   T   ++ LSP AE   +L + + ++ + W+F  T   FM    T R
Sbjct: 208 WLTFTRISSAGLSPNAETFEILLVAFASQKNFWFFEKTYDLFMQSKLTWR 257


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
 Frame = +2

Query: 59  SSPTRTMSSANSIHQGASSCMSDVRASII--RMNR*GLKADPWCKPTVTLNSSLSPAAER 232
           S+ T T + + S+ Q ++S  +   A II  R ++  L+  P   P   L SSL P++ R
Sbjct: 154 SAITETTNPSVSV-QNSNSTSTSSAAMIIPHRDSQNSLEIAPLISPESQL-SSLHPSSSR 211

Query: 233 TYVLALPYIARTSRW 277
            ++++ P++ R +++
Sbjct: 212 RHLISTPHVNRGTQF 226


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 555 RGIKLMSHSMKAWEKVIARRMRDESEVSQNQFGFMPGRSTTDAIFSLRQLCEKY 394
           RGI  + HS+  W    A +M    + ++ +  FM G +     F      +KY
Sbjct: 97  RGIAGIPHSVDLWTNYCAFKMETNGDANEVRELFMQGANMVGLDFLSHPFWDKY 150


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -2

Query: 668 LYSSINCFKKRPCLTSGAKVHSCLYLRAKVTYRYATIIEE 549
           +Y S+ CFKK         +H C+++        A I+E+
Sbjct: 199 IYFSVRCFKKNVNNPKDIFLHLCIFVSVSFATVLACILED 238


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -1

Query: 399 KYRRASKNVHMVFVDLEKAYDRVPREVLWWSMKVK 295
           K+R   +  + V +D++  YDR+ +++++  +K K
Sbjct: 576 KHRMFGRKKYFVRIDIKSCYDRIKQDLMFRIVKKK 610


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +1

Query: 496 SSRYHFLPSFHTM*HELYSSIIVAYLYVTFALKYRHE*TFAPLVRHGLFLKQFI 657
           SS +HF+ S  T       +I VA + V  +L Y H     P  + G+ LK+++
Sbjct: 138 SSSFHFVTSPSTFFIRYDDNITVAGINVQDSLSYSHY-QALPDFQFGITLKEYV 190


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 199 TELVAIASCGAYVRTSSTVHSSNKPLVFPWHSFHFHAPPQN 321
           T LV  ASCG YV ++        P V P H   F  P ++
Sbjct: 281 TVLVEAASCGLYVISTKV---GGVPEVLPSHMTRFARPEED 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,655
Number of Sequences: 5004
Number of extensions: 66444
Number of successful extensions: 202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)