Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0040
(714 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20520.1 68417.m02991 hypothetical protein 38 0.007
At1g48840.1 68414.m05468 expressed protein contains Pfam profile... 31 0.76
At5g42020.2 68418.m05116 luminal binding protein 2 (BiP-2) (BP2)... 30 1.8
At5g42020.1 68418.m05115 luminal binding protein 2 (BiP-2) (BP2)... 30 1.8
At5g28540.1 68418.m03480 luminal binding protein 1 (BiP-1) (BP1)... 30 1.8
At3g21190.1 68416.m02678 expressed protein contains Pfam PF03138... 29 3.1
At1g51630.1 68414.m05817 expressed protein contains Pfam PF03138... 29 3.1
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)... 29 3.1
At4g24240.1 68417.m03479 WRKY family transcription factor contai... 28 5.3
At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /... 28 5.3
>At4g20520.1 68417.m02991 hypothetical protein
Length = 376
Score = 37.9 bits (84), Expect = 0.007
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = -1
Query: 465 QFGFMPGRSTTDAIFSLRQLCEKYRRAS--KNVHMVFVDLEKAYDRVPREVLWWSMKVKG 292
Q F+PGR +TD I +++ RR K ++ +DLEKAYDR+ + L ++ G
Sbjct: 17 QASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDYLEDTLISAG 76
Query: 291 VPGKY-QRLVRAMYG 250
P + + R+ +G
Sbjct: 77 FPEVWLPEIARSTFG 91
>At1g48840.1 68414.m05468 expressed protein contains Pfam profile:
PF04842 plant protein of unknown function (DUF639)
Length = 691
Score = 31.1 bits (67), Expect = 0.76
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Frame = +2
Query: 161 GLKADPWCKPTVTLNSSLSPAAE-RTYVLALPYIARTSRWYFPGTPFTFMLHHK--TSRG 331
G+K D + L PA E ++L+L Y W P F F L RG
Sbjct: 481 GVKVDGIDTNVAVMKELLLPATEIGNWLLSLVY------WEDPLKSFVFCLLSTFIIYRG 534
Query: 332 TLSYAFSKSTNTMCTFLLARRYFSHNWRREKMASVVLRPGMN 457
+ Y F+ +T + F++ RYFS+ + V+ P MN
Sbjct: 535 WIGYVFAIATLFIAGFMVLTRYFSNREKVMIELKVMAPPPMN 576
>At5g42020.2 68418.m05116 luminal binding protein 2 (BiP-2) (BP2)
similar to SWISS-PROT: Q39043; GI:1303695; luminal
binding protein (BiP) [Arabidopsis thaliana]
Length = 613
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 429 AIFSLRQLCEKYRRASKNVHMVFVDLEKAYDRV 331
A+ LR+ CE+ +RA + H V V++E +D V
Sbjct: 290 ALGKLRRECERAKRALSSQHQVRVEIESLFDGV 322
>At5g42020.1 68418.m05115 luminal binding protein 2 (BiP-2) (BP2)
similar to SWISS-PROT: Q39043; GI:1303695; luminal
binding protein (BiP) [Arabidopsis thaliana]
Length = 668
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 429 AIFSLRQLCEKYRRASKNVHMVFVDLEKAYDRV 331
A+ LR+ CE+ +RA + H V V++E +D V
Sbjct: 290 ALGKLRRECERAKRALSSQHQVRVEIESLFDGV 322
>At5g28540.1 68418.m03480 luminal binding protein 1 (BiP-1) (BP1)
SWISS-PROT:Q9LKR3 PMID:8888624
Length = 669
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 429 AIFSLRQLCEKYRRASKNVHMVFVDLEKAYDRV 331
A+ LR+ CE+ +RA + H V V++E +D V
Sbjct: 290 ALGKLRRECERAKRALSSQHQVRVEIESLFDGV 322
>At3g21190.1 68416.m02678 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 422
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 627 DEWCKSSLVPVFKSKGDIQVCDNYRGIKLMSHS 529
+++ K + P+FKSKG+I+V + + L S
Sbjct: 182 EDYIKEHIDPIFKSKGNIRVASYFPSVNLRKSS 214
>At1g51630.1 68414.m05817 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 423
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 627 DEWCKSSLVPVFKSKGDIQVCDNYRGIKLMSHSMKA 520
+++ K + P+FKSKG+I+V + + L S A
Sbjct: 183 EDYIKEHIDPIFKSKGNIRVTTYFPSVNLRKSSQGA 218
>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
Similar to Arabidopsis luminal binding protein
(gb|D89342); contains Pfam domain PF00012: dnaK protein
Length = 678
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 429 AIFSLRQLCEKYRRASKNVHMVFVDLEKAYDRV 331
A+ LR+ CE +R+ N H V V++E +D V
Sbjct: 304 ALGKLRRECELAKRSLSNQHQVRVEIESLFDGV 336
>At4g24240.1 68417.m03479 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 353
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 4 GGGHEVFPFCQSPLYLRPFLSNENN 78
GGG +C +P++ RP LS+ NN
Sbjct: 138 GGGSAFRVYCPTPIHRRPPLSHNNN 162
>At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from
(Glycine max); contains PF00295: Glycosyl hydrolases
family 28 (polygalacturonases)
Length = 491
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +1
Query: 31 CQSPLYLRPFLSNENNVVGEQ--HTPRRLFLYVRC*GIH 141
C SP+ LR F+S+ V G Q ++P+ F + C G+H
Sbjct: 220 CDSPIALRFFMSSNLRVEGLQIKNSPQFHFRFDGCQGVH 258
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,621,449
Number of Sequences: 28952
Number of extensions: 355745
Number of successful extensions: 1074
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -