Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0039
         (612 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4N452 Cluster: Putative uncharacterized protein; n=1; ...    34   3.1  
UniRef50_Q9JFN4 Cluster: Hemagglutinin; n=1; Tupaia paramyxoviru...    33   7.1  

>UniRef50_Q4N452 Cluster: Putative uncharacterized protein; n=1;
            Theileria parva|Rep: Putative uncharacterized protein -
            Theileria parva
          Length = 2089

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 269  IFSVLSLTRFIP-LVVIKTKYYSQLHLNIAQEPVSLGELPMRS*IFIETIFANFINGNQY 93
            I  ++ L +F+P L+ +KT Y    H N  + P+S G + M+  I    ++  ++N   Y
Sbjct: 1710 ISEIIGLIQFLPNLITLKTLYNDVEHNNQVENPISGGNIDMKKLIM---LYIKYVNSKHY 1766


>UniRef50_Q9JFN4 Cluster: Hemagglutinin; n=1; Tupaia
           paramyxovirus|Rep: Hemagglutinin - Tupaia paramyxovirus
           (TPMV)
          Length = 665

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 303 FISCKLSYQPIKIAVVSFLWNLLPQVHSELIKYKKKYRKAICVC-RPKERYDISSKGLID 479
           +   K+ Y P  IA+ ++ ++L+P +    I   +    AIC   + KE  D S+ G+  
Sbjct: 316 YYKTKMIYPPDYIAIATYTYDLVPNLRDCSIAVNQTSLAAICTSKKTKENQDFSTSGVHP 375

Query: 480 VGFLTFN 500
               T N
Sbjct: 376 FYIFTLN 382


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 582,376,637
Number of Sequences: 1657284
Number of extensions: 11270548
Number of successful extensions: 21021
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21020
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)