Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0039
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_48889| Best HMM Match : DUF234 (HMM E-Value=2)                      27   9.1  
SB_32084| Best HMM Match : PAN (HMM E-Value=0.019)                     27   9.1  
SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  
SB_30854| Best HMM Match : PAN (HMM E-Value=0.019)                     27   9.1  

>SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1163

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 356  FVEPVASSPFRAHKIQKKIQKGDLCVSPKR 445
            FV+P+A +P R H++  ++QK  L V  KR
Sbjct: 1045 FVKPLAPAPQRLHRMLMRLQKYSLQVKYKR 1074


>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 356 FVEPVASSPFRAHKIQKKIQKGDLCVSPKR 445
           FV+P+AS+P R  ++  ++QK  L V  KR
Sbjct: 99  FVKPLASAPKRMQRMLMRLQKYSLQVKYKR 128


>SB_48889| Best HMM Match : DUF234 (HMM E-Value=2)
          Length = 314

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +2

Query: 356 FVEPVASSPFRAHKIQKKIQK 418
           FV+P+AS+P R H++  ++QK
Sbjct: 291 FVKPLASAPQRLHRMLMRLQK 311


>SB_32084| Best HMM Match : PAN (HMM E-Value=0.019)
          Length = 472

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 360 WNLLPQVHSELIKYKKKYRKAICVCRPKERYDISSKGLIDV 482
           WNL+   HS     KKK RKA    + K+ Y +   G  DV
Sbjct: 82  WNLVKLPHSIHGILKKKERKASSCNQLKKSYPLLKSGYYDV 122


>SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 356 FVEPVASSPFRAHKIQKKIQKGDLCVSPKR 445
           FV P+AS+P R  ++  ++QK  L V  KR
Sbjct: 726 FVRPLASAPQRLQRMLMRLQKYSLQVKYKR 755


>SB_30854| Best HMM Match : PAN (HMM E-Value=0.019)
          Length = 209

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 360 WNLLPQVHSELIKYKKKYRKAICVCRPKERYDISSKGLIDV 482
           WNL+   HS     KKK RKA    + K+ Y +   G  DV
Sbjct: 82  WNLVKLPHSIHGILKKKERKASSCNQLKKSYPLLKSGYYDV 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,070,695
Number of Sequences: 59808
Number of extensions: 349097
Number of successful extensions: 706
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)