Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0039
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical p...    28   4.6  
U64859-1|AAC69092.2|  468|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF025451-7|AAB71204.1|  207|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical
           protein T04A8.13 protein.
          Length = 791

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/63 (23%), Positives = 33/63 (52%)
 Frame = +3

Query: 300 IFISCKLSYQPIKIAVVSFLWNLLPQVHSELIKYKKKYRKAICVCRPKERYDISSKGLID 479
           IF+ C  S   + I++   +++  P+  +  +   + + + +   RP+ R+D+ SK  +D
Sbjct: 287 IFLVCSSSLVRLHISLFLPIFSSFPEKKASTLNTSRIFVRFLMKLRPQIRFDL-SKRHVD 345

Query: 480 VGF 488
            GF
Sbjct: 346 FGF 348


>U64859-1|AAC69092.2|  468|Caenorhabditis elegans Hypothetical
           protein R09F10.3 protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = -3

Query: 598 QKKVDKQGDSSIMFK*IKKNG----IRKVCMKHKALKLNVKKPTSIRPFEEIS*RSFGRH 431
           +K  DK+   +I F  I++NG    I  +        +N     +I PF       + R 
Sbjct: 337 EKNTDKEIVYTIKFLIIERNGSIEYINIMAPTEDWHMVNDYAIPTINPFAPSRYEVYRRL 396

Query: 430 TQIAFLYFFLYFMSSEWT*GNRFH 359
           T+ A ++ F  F  + WT G  FH
Sbjct: 397 TKQANIHLFNCFAQNRWTAGTLFH 420


>AF025451-7|AAB71204.1|  207|Caenorhabditis elegans Hypothetical
           protein C24H12.8 protein.
          Length = 207

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 180 RAG*SWRITHAKLNFH*NHFCKFYKWQSILVFTS 79
           + G  W  TH  +NF+ N FC  Y   ++L  TS
Sbjct: 119 KQGIEWA-THFDVNFYINFFCTHYNKMNVLPCTS 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,889,255
Number of Sequences: 27780
Number of extensions: 289478
Number of successful extensions: 605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)