Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0038
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49230.1 68414.m05519 zinc finger (C3HC4-type RING finger) fa...    31   0.53 
At4g00620.1 68417.m00086 tetrahydrofolate dehydrogenase/cyclohyd...    29   2.8  
At5g42680.1 68418.m05199 expressed protein contains Pfam profile...    27   8.7  
At4g29880.1 68417.m04252 leucine-rich repeat family protein cont...    27   8.7  
At1g69480.1 68414.m07983 EXS family protein / ERD1/XPR1/SYG1 fam...    27   8.7  

>At1g49230.1 68414.m05519 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 219

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 512 PSSYGG*NYPARRTNVGEEEEASSGVQT 595
           PS  GG NYP R TN G + +A    QT
Sbjct: 88  PSEAGGDNYPVRLTNTGVKRKALKSFQT 115


>At4g00620.1 68417.m00086 tetrahydrofolate
           dehydrogenase/cyclohydrolase, putative similar to
           SP|P07245 C-1-tetrahydrofolate synthase, cytoplasmic
           (C1-THF synthase) [Includes: Methylenetetrahydrofolate
           dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
           cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
           synthetase (EC 6.3.4.3)] {Saccharomyces cerevisiae};
           contains Pfam profiles PF02882: Tetrahydrofolate
           dehydrogenase/cyclohydrolase, NAD(P)-binding domain,
           PF00763: Tetrahydrofolate dehydrogenase/cyclohydrolase,
           catalytic domain
          Length = 360

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 182 KMDRGSLLFEIGLLGDFSGIINFSVLILVGDRKTRSTY 295
           K  R  +  E+  + +  G+I    +ILVGDRK  +TY
Sbjct: 79  KKIRDEITIEVSRMKESIGVIPGLAVILVGDRKDSATY 116


>At5g42680.1 68418.m05199 expressed protein contains Pfam profile
           PF04759: Protein of unknown function, DUF617
          Length = 238

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 427 PHCLPVLIAFYLQIPVLIASTGRHFVVATYRAELTTRSLPRTKTV 293
           PHCLP+   F +++P+L ++  +     T R  L + +    K V
Sbjct: 97  PHCLPI---FIIELPMLTSALQKEMASETVRIALESETKTSRKKV 138


>At4g29880.1 68417.m04252 leucine-rich repeat family protein
           contains leucine rich repeats, Pfam:PF00560
          Length = 404

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 473 RKRCISVRRPLVSFPSSLLTCANSVLSADSSLNCVYRSP 357
           +K C++  + L+S P+++ TC  S+   D+ LNC+   P
Sbjct: 204 KKLCVNSNK-LISLPATI-TCLTSLRVLDARLNCLMILP 240


>At1g69480.1 68414.m07983 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 777

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 632 KYNLEGKNKIFISSVHHCLPPLPRQHWSF 546
           ++NL+  +KI ++S+  CL  + R  WSF
Sbjct: 713 EFNLKSLHKIAVTSIISCLEIIRRGIWSF 741


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,878
Number of Sequences: 28952
Number of extensions: 281553
Number of successful extensions: 693
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)