Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0036
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   2.2  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    25   3.9  
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    25   3.9  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   3.9  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    24   5.2  
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe...    23   9.0  

>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 176 LKVYDKPSKPEGPVIMREISRESVTIEW 259
           L++  KP K +G V+M  ++ +    +W
Sbjct: 322 LEILSKPGKADGDVVMVRVNNDVEAYQW 349


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 97  LIRITLVFSFVVILYSLSFSTCSPGIH 17
           L+R++ +F FV+I+  +  +    G+H
Sbjct: 174 LLRVSFIFKFVIIVVGIICAIAFGGLH 200


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 194 PSKPEGPVIMREISRESVTIEWKPPLDDGGLELTK 298
           P K +     + +  E    +  PPLD+G +EL K
Sbjct: 2   PPKEDWEKYQKPVDTEEENDKNPPPLDEGDIELLK 36


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = -3

Query: 183 TFSVTSTEEVPAVLEASIVYLLE*ERFNS*F 91
           T SVTST+ +PAV + S  + LE E+F+  F
Sbjct: 802 TVSVTSTQIMPAVTKMS-SFELEREQFHKAF 831


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 327  LSGSCFSMAYFVSSRPPSSKGGFHSIVTDSRLISRIITGP 208
            LSGS   +    + +   +  G H++V D  ++ R++ GP
Sbjct: 930  LSGSVEELE--AAKKDHDTPSGSHALVIDGSVLKRVLDGP 967


>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 140 SNTAGTSSVEVTLKVYDKPSKPE 208
           S + GT+S E  LK+ D   KPE
Sbjct: 173 SKSTGTTSWERILKLIDLSDKPE 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,096,888
Number of Sequences: 5004
Number of extensions: 16558
Number of successful extensions: 41
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)