Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0035
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    27   1.7  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   5.1  
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    25   9.0  
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    25   9.0  

>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 48  ELVPKPWAKPGLLGCQIQ 101
           +L P  W  PGLLGC ++
Sbjct: 196 KLTPHKWQGPGLLGCHLR 213


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 400 HFFNIYV*MYFHSFIIWTSSVLHYVFCKRHQVS 302
           H F  +V  Y    I++T+ +  Y FC  H VS
Sbjct: 688 HMFTSFV-QYIFLSIMYTNVLNVYAFCNTHDVS 719


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 506 T*W*VVTVAHGLQQCQGQSQAAAYRLILSA 417
           T W +V++ HGLQ C   +   A+ L++SA
Sbjct: 201 TNWTLVSLNHGLQSCMDPNTINAH-LVVSA 229


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 180 PKPTTLIYKKFREKYFKI 127
           PKPT+ +Y+ F + YF +
Sbjct: 7   PKPTSYLYQPFIKAYFSL 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,774
Number of Sequences: 5004
Number of extensions: 43408
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)