Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0035
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57950.1 68418.m07251 26S proteasome regulatory subunit, puta...    28   4.3  
At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR...    27   7.6  
At2g39730.3 68415.m04879 ribulose bisphosphate carboxylase/oxyge...    27   7.6  
At2g39730.2 68415.m04878 ribulose bisphosphate carboxylase/oxyge...    27   7.6  
At2g39730.1 68415.m04877 ribulose bisphosphate carboxylase/oxyge...    27   7.6  

>At5g57950.1 68418.m07251 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           non-ATPase subunit 9 SP:O00233 from [Homo sapiens]
          Length = 227

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 9   TVIVRRENADLTFELVPKPWAKPGLLGCQIQ 101
           +V V R+ A +   + P+ W   GLLGC  +
Sbjct: 195 SVQVMRQGAKVVLSVTPRIWQGRGLLGCHFR 225


>At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1046

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 16  LLGGKM-LT*PSSLCQNPGLSLVYWDVRYKQRTL 114
           LLGG++ L  P  +   P L L+YWD RY +++L
Sbjct: 550 LLGGEVTLQIPEDMDYIPRLRLLYWD-RYPRKSL 582


>At2g39730.3 68415.m04879 ribulose bisphosphate
           carboxylase/oxygenase activase / RuBisCO activase
           identical to SWISS-PROT:P10896 ribulose bisphosphate
           carboxylase/oxygenase activase, chloroplast precursor
           (RuBisCO activase, RA)[Arabidopsis thaliana]
          Length = 441

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 219 VMCS*KKLHVNGNPKPTTLIYKKFREKYFKI*RIKKCSLFVSDI 88
           +M S  +L      +P  LI +++RE    I + K C LF++D+
Sbjct: 187 IMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDL 230


>At2g39730.2 68415.m04878 ribulose bisphosphate
           carboxylase/oxygenase activase / RuBisCO activase
           identical to SWISS-PROT:P10896 ribulose bisphosphate
           carboxylase/oxygenase activase, chloroplast precursor
           (RuBisCO activase, RA)[Arabidopsis thaliana]
          Length = 446

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 219 VMCS*KKLHVNGNPKPTTLIYKKFREKYFKI*RIKKCSLFVSDI 88
           +M S  +L      +P  LI +++RE    I + K C LF++D+
Sbjct: 187 IMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDL 230


>At2g39730.1 68415.m04877 ribulose bisphosphate
           carboxylase/oxygenase activase / RuBisCO activase
           identical to SWISS-PROT:P10896 ribulose bisphosphate
           carboxylase/oxygenase activase, chloroplast precursor
           (RuBisCO activase, RA)[Arabidopsis thaliana]
          Length = 474

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 219 VMCS*KKLHVNGNPKPTTLIYKKFREKYFKI*RIKKCSLFVSDI 88
           +M S  +L      +P  LI +++RE    I + K C LF++D+
Sbjct: 187 IMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDL 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,070,788
Number of Sequences: 28952
Number of extensions: 213880
Number of successful extensions: 390
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)