Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0033
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    62   5e-11
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    27   3.1  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   4.2  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   5.5  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.3  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    25   7.3  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   9.6  

>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 33/85 (38%), Positives = 50/85 (58%)
 Frame = -2

Query: 595 AVYTINVYEDTDGAYQANPVIITPPNSIHILWLIPQYVVMTMGEVMFSVTGLEFSFTQAP 416
           AV    +Y+   G   AN       N I +   IP YV++   E+  S+TGLEF+FT+AP
Sbjct: 448 AVLQAKIYQR--GPCYANFTDTCVSNDISVWIQIPAYVLIAFSEIFASITGLEFAFTKAP 505

Query: 415 ASMKSVLQSVWLLTVAFGNLIVVLI 341
            SMKS++ +++L T AFG ++ + I
Sbjct: 506 PSMKSIITALFLFTNAFGAILSICI 530


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 408 ILAGACVKENSKPVTENITSPIVITTY*GINQRMCI-LFGGVIITGFA**APSVSS*TLI 584
           IL  AC+K  + PV  N T  ++   Y  I   MC  L GG+ +T         S    +
Sbjct: 244 ILDNACLKIVTDPVPYNNTVMVMPNLYGDIVSDMCAGLIGGLGLTPSGNIGNQASIFEAV 303

Query: 585 V*TAPDL 605
             TAPD+
Sbjct: 304 HGTAPDI 310


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/61 (22%), Positives = 33/61 (54%)
 Frame = +3

Query: 288 PANKKNSFH*ASKKFPSTMRTTIKFPKATVRSQTDCSTDFILAGACVKENSKPVTENITS 467
           P++  +        FPS++ + +    +TVRS +  STD + + + +  +S  ++ +++S
Sbjct: 321 PSSSSSLVTIGESSFPSSLLSLLTQSFSTVRSTSSSSTDQLTSASPI--SSSVISPSVSS 378

Query: 468 P 470
           P
Sbjct: 379 P 379


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -1

Query: 305  ILLVRRSYVIG--HVFIFTAMAFRYKYVDHNRAQRRILPLKRSNAGKP 168
            +L   RSY+ G  HVF     +  Y  V H+   ++I  +   N  KP
Sbjct: 1151 LLFNHRSYMSGRFHVFYSILKSLLYSMVQHDSEMKKIKGIALMNFYKP 1198


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +3

Query: 240 SERHRRENENMSNNIRPANKKNSFH*ASKKF 332
           S+ + +EN+ + +++ P  +KNSF  A +++
Sbjct: 244 SKPYAKENQQLISSMAPVEQKNSFSTAREQY 274


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 351 TIKFPKATVRSQTDCSTDFILAGACVKENSKPVTENI 461
           T+K     V S+    +D ++  +CV +  +PVT NI
Sbjct: 186 TLKLYTLEVHSKKKDVSDTLIQFSCVNQFEEPVTSNI 222


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 607  FKSGAVYTINVYEDTDGAYQANPVIITPPNSIHILWLIPQYVVMTMGEV 461
            F++   Y +   E  D   Q   V  T  NS+H+ W++   +VM +GE+
Sbjct: 1008 FETERRYFLQDLEIEDALQQILEVTFTFLNSMHMDWIV---IVMKIGEM 1053


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,702
Number of Sequences: 5004
Number of extensions: 56808
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)