Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0033
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.9  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 234 VRGSQSSTEEDIAVEEIKCRKTTYTKDIR 148
           VR S    E+D   E I+C +++  K+I+
Sbjct: 39  VRVSNGGKEQDFRFEAIQCLQSSAFKEIK 67


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 52 CRFLQPGGSI 23
          C FL PGGS+
Sbjct: 68 CEFLNPGGSV 77


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 225 IHVLVSERHRRENENMSNNIRP 290
           I  +++ RHR      S N+RP
Sbjct: 221 ISCVIASRHRNLEATESENVRP 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,909
Number of Sequences: 438
Number of extensions: 4074
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)