Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0031
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    28   0.65 
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    28   0.86 
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    27   1.1  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    27   2.0  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    27   2.0  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    25   6.1  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   6.1  
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    25   6.1  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   6.1  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   8.0  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   8.0  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.0  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   8.0  

>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 28.3 bits (60), Expect = 0.65
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = +3

Query: 45  KTNPKTSHNKISSSVFPYT--KQKTDTDYVYSSCAQRNVVLVCKHCVSCVFMCPKHDGFF 218
           K  P  SH + +  + P    KQK +  +    C  R +  V K  + C   CP  + F 
Sbjct: 282 KKGPVFSHAEFAILLIPCVGNKQKYNMQWHEVHCLNRVIAQVKKSLILCYVQCPSIEDFN 341

Query: 219 K 221
           K
Sbjct: 342 K 342


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 120 DYVYSSCAQRNVVLVCKHCVSCVFMCPKHDGFFKAQDLNL 239
           D VY         +VC+ CVSC F  P H  FF ++ L L
Sbjct: 214 DVVYMDGGNLKSTIVCQ-CVSCPFQIPGH--FFISKSLAL 250


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 9  SLCEPKRTLSKKKTNPKTSHNKISSSVFP 95
          +L EP+R L K   +P+   +++  SVFP
Sbjct: 10 TLIEPQRLLRKNTWHPEVDDSEVPPSVFP 38


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 297 RSKQIPLTDLPGTTVAAVSESDTTSW 374
           +SK IP++ L GT + ++S+   + W
Sbjct: 449 KSKFIPISGLKGTNLTSISQEKLSQW 474


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +1

Query: 352 PSQIPRRGPAPSLPWTLSPSPAR 420
           PS IP R P P    TLSP P R
Sbjct: 585 PSVIPPRVPTPVPGRTLSPKPTR 607


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 351 SESDTTSWPGAVAALDSLTVACEKDSMQVTITLAKRDPEINSIYD 485
           S+   T   GA+A L+ L V  E  +  +   L K++  I +++D
Sbjct: 197 SQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKKNDAIVAVFD 241


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -3

Query: 360 LTRIPQLPSFPVNLLAGFAWNARSRAARL--LSINTSFFNLFLSL 232
           L  IP       N +A + WN    AARL  LS    F + F SL
Sbjct: 86  LVTIPFTGKETKNSIASYDWNLTGVAARLGYLSCGLFFVSYFFSL 130


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/39 (28%), Positives = 14/39 (35%)
 Frame = +1

Query: 349 YPSQIPRRGPAPSLPWTLSPSPARKTACKSPLHWRNGTP 465
           Y  ++P     P L W  S  P  +   K    WR   P
Sbjct: 132 YEFEVPYHADIPKLIWQTSKDPFDREVMKYTRFWRINHP 170


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 252 KMRCLLIISALLATARSKQIPL 317
           K  CL ++S  L  +RS QIP+
Sbjct: 387 KTICLTVVSRFLRKSRSSQIPM 408


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 392 PGLSHRRLRERQHASHHYTG 451
           P +  RRL  R H+ +HY G
Sbjct: 152 PSIKTRRLGMRGHSKYHYCG 171


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = -3

Query: 177 HSACTLKPHFVGHKKN---KHNQC 115
           +S C  K HF+GHK N    +N C
Sbjct: 352 NSRCDTKYHFLGHKCNSCHSYNTC 375


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 54  PKTSHNKISSSVFPYTKQKTDT 119
           P TSHN  +++V P T   T T
Sbjct: 73  PSTSHNSTTTTVPPTTSMNTTT 94


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 36   SKKKTNPKTSHNKISSSVFPYTKQKTDT 119
            S   +N K + NK+ S+V P++   +DT
Sbjct: 3668 SSFSSNSKVTSNKVPSTVSPHSSSISDT 3695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,979
Number of Sequences: 5004
Number of extensions: 38599
Number of successful extensions: 130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)