Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0031
(485 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0759 + 6369149-6369231,6369765-6371556 29 1.5
06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890... 28 3.5
04_04_0146 + 23106325-23108154 28 3.5
09_04_0711 + 19666277-19666283,19666836-19666954,19667068-196672... 28 4.6
07_03_0808 - 21668100-21669092 28 4.6
06_01_1002 + 7796367-7796651,7796727-7797489,7797800-7797915 28 4.6
07_03_1500 + 27001842-27002058,27002144-27002283,27002458-270025... 27 6.0
10_08_0367 - 17236838-17236852,17237051-17237152,17237246-17238283 27 8.0
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 27 8.0
02_05_0363 - 28297295-28298167 27 8.0
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312... 27 8.0
01_05_0781 + 25140652-25142010 27 8.0
01_04_0086 + 15916555-15916905,15917236-15917262 27 8.0
>11_01_0759 + 6369149-6369231,6369765-6371556
Length = 624
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 330 GTTVAAVSESDTTSWPGAVAALDSLTVACEKDSMQV 437
G T+ VS PG D +T+ CEK M++
Sbjct: 423 GATITHVSSGKNCKSPGCTGTADGVTMLCEKHRMKM 458
>06_03_1384 +
29786028-29786657,29788581-29788711,29788987-29789028,
29789383-29789441,29789774-29790070,29790180-29790289,
29790966-29791070,29791201-29791263,29791766-29791933,
29792111-29792248
Length = 580
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 349 YPSQIPRRGPAPSLPWTLSPSPARKT 426
+PS P G +P LP +SPSPAR T
Sbjct: 73 WPSPYPSGGASP-LPAGVSPSPARST 97
>04_04_0146 + 23106325-23108154
Length = 609
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 352 PSQIPRRGPAPS-LPWTLSPSPARKTACKSPL 444
P +P + P PS PW +P P + A PL
Sbjct: 14 PPPVPAQAPPPSPRPWYAAPPPPPQAAAADPL 45
>09_04_0711 +
19666277-19666283,19666836-19666954,19667068-19667277,
19667362-19667510,19667588-19667759,19668323-19668415,
19668522-19668661,19668752-19668851
Length = 329
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 375 PGAVAALDSLTVACEKDSMQVTITLAKRDPEINSIYD 485
PG + L+SLT K+ ++ ++ K DP + I D
Sbjct: 114 PGMSSMLESLTSPSHKELLEERMSRIKEDPSLKGILD 150
>07_03_0808 - 21668100-21669092
Length = 330
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 280 RCSRPRVPSKSXXXXXXXXXXXXYPSQIPRRGPAPSLPWTLSPSPA 417
R RPR P ++ PS PRR P P P + SP P+
Sbjct: 135 RARRPRRPRRARGHQHQPALRHLPPSTAPRRTPPP--PGSASPRPS 178
>06_01_1002 + 7796367-7796651,7796727-7797489,7797800-7797915
Length = 387
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 318 TDLPGTTVAAVSESDTTSWPGAVAALD 398
TD GTT AA+ S+T +W G A++D
Sbjct: 162 TDAAGTTYAALYSSETEAWSGP-ASID 187
>07_03_1500 +
27001842-27002058,27002144-27002283,27002458-27002549,
27002680-27002776,27002871-27002951,27003031-27003263,
27003876-27004070,27004149-27004239,27004324-27004446,
27004542-27004692,27005060-27005262
Length = 540
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +3
Query: 255 MRCLLIISALLATARSKQIPLTDLPGTTVAAVSESDTTSWPGAVAALDSLTVACEKDSM 431
M C ++IS L + Q DL + ESD G V +DS+ AC S+
Sbjct: 262 MHCDILISTPLRLDHAVQKRDLDLSRVEYLVLDESDKLFELGFVEVIDSVVKACSNPSI 320
>10_08_0367 - 17236838-17236852,17237051-17237152,17237246-17238283
Length = 384
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 352 PSQIPRRGPAPSLPWTLSPSPARKT 426
PSQI G + P+T+S SPARK+
Sbjct: 243 PSQIIGDGGLVAPPYTISSSPARKS 267
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 352 PSQIPRRGPAPSLPWTLSPSPARKTACKSP 441
P+ P R P P+ P P+P++ A ++P
Sbjct: 187 PAPTPPRAPTPTPPQAPLPAPSKSRASQAP 216
>02_05_0363 - 28297295-28298167
Length = 290
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 391 PWTLSPSPARKTACK 435
PW SPSP R+T C+
Sbjct: 205 PWQPSPSPMRRTPCR 219
>02_03_0388 +
18429538-18430598,18430971-18431081,18431165-18431237,
18431513-18431695
Length = 475
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 352 PSQIPRRGPAPSLPWTLSPSPARKTACKSP 441
P+ P + PAP+ P P+P++ A ++P
Sbjct: 103 PAMTPPQAPAPTPPQAPRPAPSKSRAPQAP 132
>01_05_0781 + 25140652-25142010
Length = 452
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 452 RQCNGDLHAVFLAGDGERV 396
R GD+ AVFLA DG RV
Sbjct: 332 RSARGDVEAVFLAPDGVRV 350
>01_04_0086 + 15916555-15916905,15917236-15917262
Length = 125
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 78 SSSVFPYTKQKTDTDYVYSSCAQRNVV 158
+S+V + +K+D DY +SCAQ V+
Sbjct: 93 ASAVQSWVGEKSDYDYASNSCAQGKVI 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,799,293
Number of Sequences: 37544
Number of extensions: 254694
Number of successful extensions: 965
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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