Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0031
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY714241-1|AAV68307.1|  529|Caenorhabditis elegans SPD-1 protein.      28   4.1  
AC024756-3|AAT81176.1|  529|Caenorhabditis elegans Spindle defec...    28   4.1  
U88172-5|AAB42260.1|  483|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z81544-3|CAB04435.1|  255|Caenorhabditis elegans Hypothetical pr...    27   7.2  
L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline acetylt...    27   7.2  
L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline acetylt...    27   7.2  
AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal chol...    27   7.2  
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AC006795-1|AAF59492.2|  435|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AY714241-1|AAV68307.1|  529|Caenorhabditis elegans SPD-1 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 352 PSQIPRRGPAPSLPWTLSPSPARKTACKSPLHWRNGTPKSIAST 483
           P++    GP  S P    PS +  +   +P+  R  TP SIAS+
Sbjct: 470 PTRRQAVGPKTSSPKDTQPSTSSSSRTTTPMSKRAMTPSSIASS 513


>AC024756-3|AAT81176.1|  529|Caenorhabditis elegans Spindle
           defective protein 1 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 352 PSQIPRRGPAPSLPWTLSPSPARKTACKSPLHWRNGTPKSIAST 483
           P++    GP  S P    PS +  +   +P+  R  TP SIAS+
Sbjct: 470 PTRRQAVGPKTSSPKDTQPSTSSSSRTTTPMSKRAMTPSSIASS 513


>U88172-5|AAB42260.1|  483|Caenorhabditis elegans Hypothetical
           protein ZK354.8 protein.
          Length = 483

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
 Frame = +1

Query: 355 SQIPRRGPAPSLPWTL------SPSPARKTACKSP 441
           SQ+PR  PAP++P ++      SPSP    A + P
Sbjct: 127 SQLPRMSPAPAIPPSMAQPLLQSPSPGADIAIRRP 161


>Z81544-3|CAB04435.1|  255|Caenorhabditis elegans Hypothetical
           protein F49C5.7 protein.
          Length = 255

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -2

Query: 409 TVRESRAATAPGHDVVSDSDTAATVVPGKSVSGICLERAVASSAL 275
           T+  +  A  P H + +    +A   P     G+C+E+ V   AL
Sbjct: 99  TISSNFQAATPKHQLCTKPKQSAITWPNSLFRGMCIEKPVTGHAL 143


>L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 349 TAATVVPGKSVSGICLERAVASSALIIN 266
           T   VV    V+G+C+E + A   +IIN
Sbjct: 324 TIQLVVSSSGVNGLCIEHSTAEGIVIIN 351


>L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 349 TAATVVPGKSVSGICLERAVASSALIIN 266
           T   VV    V+G+C+E + A   +IIN
Sbjct: 324 TIQLVVSSSGVNGLCIEHSTAEGIVIIN 351


>AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal choline
           acetyltransferaseprotein 1, isoform b protein.
          Length = 627

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 349 TAATVVPGKSVSGICLERAVASSALIIN 266
           T   VV    V+G+C+E + A   +IIN
Sbjct: 324 TIQLVVSSSGVNGLCIEHSTAEGIVIIN 351


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +3

Query: 276 SALLATARSKQIPLTDLPGTTVAAVSESDTTSWPGAVAALDSLTVACEKDSMQVT 440
           S  L T +S     +  PG+T++  S + TTS P   +     T + +  S   T
Sbjct: 442 STTLGTTQSTTSGPSTTPGSTISTTSSASTTSGPSTSSGSTVSTTSGQSTSSGTT 496


>AC006795-1|AAF59492.2|  435|Caenorhabditis elegans Hypothetical
           protein Y50D4B.7 protein.
          Length = 435

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 198 DT*KHRTHSACTLKPHFVGHKKNKHNQCQFFVLYTEK 88
           +T  H+  +  +L+P+FVG+ K   N+    V+Y EK
Sbjct: 268 NTYSHKRQNGSSLEPYFVGNVKRVENR-TLGVVYFEK 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,098,605
Number of Sequences: 27780
Number of extensions: 228613
Number of successful extensions: 789
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)