Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0029
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    27   1.1  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   1.8  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   3.2  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   3.2  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   5.6  
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    25   5.6  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    24   7.4  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    24   9.8  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    24   9.8  

>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 47  HWQEQCFAESTTGSKTRLTEKFRRETQWADSAQYFVY 157
           +W++ C  +S    K  + EK     Q+ADS  Y  Y
Sbjct: 663 NWRKVCVPKSEMEEKEAIMEKLIYSHQYADSLSYVDY 699


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = +1

Query: 151 CLFRLFIYTSHVLYRYIVRRKNG---FYRHPR 237
           C FR FI+T++ LY +   +K        HPR
Sbjct: 556 CFFRTFIWTTYKLYPFSFEKKEAMAFLLDHPR 587


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 368 IVKYIFLFAIHTSSSDWVS*NNSRRLTHIRRVTRKLVC 255
           IV +  L   + SSS WVS N S R+  I  +   + C
Sbjct: 219 IVFFAVLAYFYPSSSSWVSSNVSNRIVRIFFLLSAMKC 256


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 223 YRHPRFNTRK*QTSFRVTRLICVNLRELF*LTQSEELVW---MANKKMYFTI 369
           + H +  T+    SFR+T L+  +    F +T +E  VW     N +++ T+
Sbjct: 684 HMHDKNTTKMGNISFRITHLVWDDRVICFRVTMNENSVWYGKTCNPQLHITL 735


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 24  GSNRSVANTGKSSASQNLPPDRKRDSLRSSGEKL 125
           GSN ++  + KS+ASQ    D    S   S EK+
Sbjct: 161 GSNYNMLQSTKSTASQRRMSDSSTPSTTKSKEKI 194


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 9   RVSSRGSNRSVANTGKSSASQNLPPDRKRDSLRSSGEKLSGLIVRSTL 152
           R+S R       +T   + S  +P    RD+L S G+++    V S L
Sbjct: 112 RISPRNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEVESIL 159


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 117 EKLSGLIVRSTLFISPFYLHVSRALPLYSKKKKR 218
           +KLS  I  ++ F+S +Y   S AL ++   K R
Sbjct: 439 QKLSETISSTSSFLSEYYRLSSEALSIFKAYKNR 472


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 15  SSRGSNRSVANTGKSSASQNLPPDRKRDSLRSSGEKLSGLIVRSTLFISPF-YLHVSRAL 191
           SSR S+R+ + +  SSAS N        S+ SS +  S  + R T F SPF  LH S   
Sbjct: 559 SSRNSSRTRSYSNVSSASSN-----SLISIISS-KPSSSTVQRQTPFHSPFERLHKSFHF 612

Query: 192 P 194
           P
Sbjct: 613 P 613


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 93  RDSLRSSGEKLSGLIVRSTLFISPFYLHVSR 185
           RDS R     L+G+  R    ISP + H SR
Sbjct: 153 RDSRRDERHYLNGIRERRERSISPSFSHHSR 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,498,794
Number of Sequences: 5004
Number of extensions: 26195
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)