Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0029
         (397 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC069251-1|AAH69251.1|  358|Homo sapiens Meis homeobox 3 protein.      29   5.6  
AL359938-1|CAB95771.1|  382|Homo sapiens hypothetical protein pr...    29   5.6  
AB209455-1|BAD92692.1|  250|Homo sapiens Homeobox protein Meis3 ...    29   5.6  
D80012-1|BAA11507.1|  813|Homo sapiens KIAA0190 protein.               29   7.4  
BX537402-1|CAD97644.1|  824|Homo sapiens hypothetical protein pr...    29   7.4  
BC000263-1|AAH00263.1|  798|Homo sapiens ubiquitin specific pept...    29   7.4  

>BC069251-1|AAH69251.1|  358|Homo sapiens Meis homeobox 3 protein.
          Length = 358

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 22/81 (27%), Positives = 39/81 (48%)
 Frame = +3

Query: 24  GSNRSVANTGKSSASQNLPPDRKRDSLRSSGEKLSGLIVRSTLFISPFYLHVSRALPLYS 203
           G + SVA+       ++L  +R+R+  R    K++  I+R+ LF      H+S   P   
Sbjct: 222 GLDTSVASPSSGGEDEDLDQERRRNKKRGIFPKVATNIMRAWLF-----QHLSHPYP-SE 275

Query: 204 KKKKRVLSSPALQY*EVTNEF 266
           ++KK++     L   +V N F
Sbjct: 276 EQKKQLAQDTGLTILQVNNWF 296


>AL359938-1|CAB95771.1|  382|Homo sapiens hypothetical protein
           protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 22/81 (27%), Positives = 39/81 (48%)
 Frame = +3

Query: 24  GSNRSVANTGKSSASQNLPPDRKRDSLRSSGEKLSGLIVRSTLFISPFYLHVSRALPLYS 203
           G + SVA+       ++L  +R+R+  R    K++  I+R+ LF      H+S   P   
Sbjct: 246 GLDTSVASPSSGGEDEDLDQERRRNKKRGIFPKVATNIMRAWLF-----QHLSHPYP-SE 299

Query: 204 KKKKRVLSSPALQY*EVTNEF 266
           ++KK++     L   +V N F
Sbjct: 300 EQKKQLAQDTGLTILQVNNWF 320


>AB209455-1|BAD92692.1|  250|Homo sapiens Homeobox protein Meis3
           variant protein.
          Length = 250

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 22/81 (27%), Positives = 39/81 (48%)
 Frame = +3

Query: 24  GSNRSVANTGKSSASQNLPPDRKRDSLRSSGEKLSGLIVRSTLFISPFYLHVSRALPLYS 203
           G + SVA+       ++L  +R+R+  R    K++  I+R+ LF      H+S   P   
Sbjct: 114 GLDTSVASPSSGGEDEDLDQERRRNKKRGIFPKVATNIMRAWLF-----QHLSHPYP-SE 167

Query: 204 KKKKRVLSSPALQY*EVTNEF 266
           ++KK++     L   +V N F
Sbjct: 168 EQKKQLAQDTGLTILQVNNWF 188


>D80012-1|BAA11507.1|  813|Homo sapiens KIAA0190 protein.
          Length = 813

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 162 PFYLHVSRALPLYSKKKKRVLSSPAL-QY*EVTNEFSRHP 278
           P Y H+ + +PLYSK ++   S+P +  +  + NEF+  P
Sbjct: 453 PMY-HLMKFIPLYSKVQRPCTSTPMIDSFVRLMNEFTNMP 491


>BX537402-1|CAD97644.1|  824|Homo sapiens hypothetical protein
           protein.
          Length = 824

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 162 PFYLHVSRALPLYSKKKKRVLSSPAL-QY*EVTNEFSRHP 278
           P Y H+ + +PLYSK ++   S+P +  +  + NEF+  P
Sbjct: 464 PMY-HLMKFIPLYSKVQRPCTSTPMIDSFVRLMNEFTNMP 502


>BC000263-1|AAH00263.1|  798|Homo sapiens ubiquitin specific
           peptidase 10 protein.
          Length = 798

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 162 PFYLHVSRALPLYSKKKKRVLSSPAL-QY*EVTNEFSRHP 278
           P Y H+ + +PLYSK ++   S+P +  +  + NEF+  P
Sbjct: 438 PMY-HLMKFIPLYSKVQRPCTSTPMIDSFVRLMNEFTNMP 476


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,694,315
Number of Sequences: 237096
Number of extensions: 920699
Number of successful extensions: 1625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1625
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)