Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0029
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical pr...    33   0.056
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    27   4.9  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    27   4.9  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    26   8.5  

>Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical
           protein ZK822.1 protein.
          Length = 913

 Score = 33.5 bits (73), Expect = 0.056
 Identities = 24/69 (34%), Positives = 33/69 (47%)
 Frame = +3

Query: 21  RGSNRSVANTGKSSASQNLPPDRKRDSLRSSGEKLSGLIVRSTLFISPFYLHVSRALPLY 200
           +  N + A T  SSAS +  P     + RSS   L GL  RST    P     + AL   
Sbjct: 193 QNDNSTSACTSPSSASSSRDPSETMTTSRSSFLDLLGLRRRSTHIPQPTSYSKTTALKQT 252

Query: 201 SKKKKRVLS 227
           +KK++R +S
Sbjct: 253 NKKRRRKIS 261


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
          ATPase protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 6  TRVSSRGSNRSVANTGKSSASQNLPP 83
          TR+S R S+RSVA+   S++S   PP
Sbjct: 11 TRISRRTSSRSVADDQPSTSSAVAPP 36


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
          protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 6  TRVSSRGSNRSVANTGKSSASQNLPP 83
          TR+S R S+RSVA+   S++S   PP
Sbjct: 11 TRISRRTSSRSVADDQPSTSSAVAPP 36


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 6   TRVSSRGSNRSVANTGKSS-ASQNLPPDRKRDSLRS 110
           +R  SR S+ S + +  SS   +N PP RKR+ +R+
Sbjct: 51  SRSRSRSSSESDSRSRSSSPVVKNSPPKRKREPIRA 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,303,356
Number of Sequences: 27780
Number of extensions: 147358
Number of successful extensions: 376
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)