Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0029
         (397 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74325.1 68414.m08607 expressed protein ; expression supporte...    28   2.6  
At2g33390.1 68415.m04093 expressed protein                             27   3.4  
At3g55000.1 68416.m06104 tonneau family protein similar to tonne...    26   7.9  
At2g24540.1 68415.m02931 kelch repeat-containing F-box family pr...    26   7.9  

>At1g74325.1 68414.m08607 expressed protein ; expression supported
           by MPSS
          Length = 179

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 27  SNRSVANTGKSSASQNLPPDRKRDSLRSSGEKLSGLIVRSTL 152
           S  S A  GKS     +  D K D   S GE+   ++ RS L
Sbjct: 94  SGHSPAFNGKSDVESKINKDEKEDKTDSRGEESYEMVKRSML 135


>At2g33390.1 68415.m04093 expressed protein 
          Length = 98

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 53  QEQCFAESTTGSKTRLTEKFRRETQWAD 136
           + QC      G  +R T+K +R  QW D
Sbjct: 38  ESQCLLPPRKGGMSRSTDKIKRTVQWND 65


>At3g55000.1 68416.m06104 tonneau family protein similar to tonneau
           1b (GI:11494367) [Arabidopsis thaliana]
          Length = 260

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 54  KSSASQNLPPDRKRDSLRSSGEKLSGL 134
           +SSAS +LPP R+  S   + ++ +GL
Sbjct: 174 RSSASDSLPPQRRPVSASQASDRRAGL 200


>At2g24540.1 68415.m02931 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 4
           [Arabidopsis thaliana] GI:10716953; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 372

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +1

Query: 142 AVLCLFRLFIYTSHVLYRYIVRRKNGFYRHPRF 240
           A LCL RL  Y  H LYR +    N    +PRF
Sbjct: 37  AELCLLRL-PYPYHALYRSVSSSWNKTITNPRF 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,725,229
Number of Sequences: 28952
Number of extensions: 135473
Number of successful extensions: 282
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)