Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0028
         (447 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)               75   3e-14
SB_52454| Best HMM Match : 3HCDH_N (HMM E-Value=1.3)                   30   0.76 
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)               27   5.3  
SB_20514| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_16000| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=5.5e-14)       27   5.3  
SB_52724| Best HMM Match : adh_short (HMM E-Value=5.1e-08)             27   9.3  
SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08)             27   9.3  
SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11)                 27   9.3  
SB_37338| Best HMM Match : FMO-like (HMM E-Value=2.1e-21)              27   9.3  
SB_22729| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
          Length = 373

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 35/100 (35%), Positives = 55/100 (55%)
 Frame = +1

Query: 148 TVREFYDGKSVFITGATGFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERMRKYLDQ 327
           +++ F+  K V ITG TGFLGK  +EKL  SC  +  IY+L R +     ++R+   L  
Sbjct: 3   SIQTFFADKVVLITGGTGFLGKVLLEKLLRSCRTVKCIYLLTRSRADHTPQQRIDNMLQT 62

Query: 328 PIFSRIKYEHPEYFKKIIPISGDITAPKLGLCDEERNILI 447
            +F  ++   P+   K+  I+GDI    LGL  E+  ++I
Sbjct: 63  RLFQNVRENDPDQLDKVTAITGDIAEADLGLSPEDMALII 102


>SB_52454| Best HMM Match : 3HCDH_N (HMM E-Value=1.3)
          Length = 114

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +1

Query: 154 REFYDGKSVFITGATGFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERMRKYLDQPI 333
           R+ Y+GK V +TG  G+ G       A S  G       IR+ + S     ++ Y+++ +
Sbjct: 6   RKCYEGKKVVVTGGAGYFGSRL--GYALSEKGAEVTLFDIREPRHSKGLTFVKNYIEKGL 63

Query: 334 FS 339
           FS
Sbjct: 64  FS 65


>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 169 GKSVFITGATGFLGKAYVEKLAYSCPGIV 255
           GK+VFITGA+  +GKA   K+A     +V
Sbjct: 5   GKTVFITGASRGIGKAIAVKVARDGANVV 33


>SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 163 YDGKSVFITGATGFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERMR 312
           + G+   +TG    +GKA VE+LA    G     + I D+ G   E  +R
Sbjct: 22  FHGRVAIVTGGASGIGKATVERLARE--GASVAILDINDELGQQVETDLR 69


>SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 154 REFYDGKSVFITGATGFLGKAYVEKL 231
           R  ++G S  + GATGFLG+  + +L
Sbjct: 15  RSSFNGVSATVFGATGFLGRYVINRL 40


>SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)
          Length = 196

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 208 GKAYVEKLAYSCPGIVSIYILIRD-KKGSNTEERMRKYLDQPIFSRIKY 351
           G+ Y+E +  S   +V+ Y  +++ +KG N    MRK L Q  F R+ +
Sbjct: 83  GERYLEWILISRRRLVNRYYQVKESEKGHNLPPDMRKELAQWEFDRVDF 131


>SB_20514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 282 LVSNQNVNAYYARTRIRKFLNVRLSKESGRSCNKNGFTIVKFPHGLI 142
           L++ QN+  +     I++ ++  LS  S     K   T ++F HGLI
Sbjct: 85  LLAIQNIKKFLGEDSIQELIDFCLSYMSNIKIPKKRGTFIEFRHGLI 131


>SB_16000| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=5.5e-14)
          Length = 628

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 280 KKGSNTEERMRKYLDQPIFSRIKYEHPEYFKKI 378
           K  S  +  + +Y ++ ++ RI YE PE+ K +
Sbjct: 532 KNWSKADVALYEYFNKTLWQRISYEEPEFSKDL 564


>SB_52724| Best HMM Match : adh_short (HMM E-Value=5.1e-08)
          Length = 316

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 166 DGKSVFITGATGFLGKAYVEKLA 234
           DGK+V ITGAT  +GK     LA
Sbjct: 36  DGKTVIITGATTGIGKETAVDLA 58


>SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08)
          Length = 319

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 166 DGKSVFITGATGFLGKAYVEKLA 234
           DGK+V ITGAT  +GK     LA
Sbjct: 36  DGKTVIITGATTGIGKETAVDLA 58


>SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11)
          Length = 1068

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +1

Query: 175 SVFITGATGFLGKAYVEKLAYSCPGIV---SIYILIRDKKGSNTEERMRKYLDQPIFSRI 345
           ++FI      L + YV+K   + P +V   S++ ++ +     T  R+R+ +D P+  R 
Sbjct: 135 TLFIQPLPSHLARHYVQK-GRAQPHVVHQRSVHDVMEEFVTGETVSRLRRSIDAPLTKRT 193

Query: 346 KYEHPE 363
            Y++ E
Sbjct: 194 GYKYLE 199


>SB_37338| Best HMM Match : FMO-like (HMM E-Value=2.1e-21)
          Length = 433

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 26/85 (30%), Positives = 39/85 (45%)
 Frame = +1

Query: 97  RVISKMSHNGTLDEHYQTVREFYDGKSVFITGATGFLGKAYVEKLAYSCPGIVSIYILIR 276
           R+ SKM   G L++HY       DGK+VF  G      +  V+ L + C G   ++  + 
Sbjct: 226 RIPSKMP--GNLEQHYGIKELTSDGKAVFKDGQ-----ERKVDALMF-CTGYDFVFPFLD 277

Query: 277 DKKGSNTEERMRKYLDQPIFSRIKY 351
            K G    +     L Q +F+ IKY
Sbjct: 278 SKCGIKVTDNHITPLYQHMFN-IKY 301


>SB_22729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 352 EHPEYFKKIIPISGDITAPKLGLCDEERNI 441
           +HPE+  KI  +  DI   K  + DEE NI
Sbjct: 362 KHPEFRSKIQQLQRDIKLLKKQVADEEINI 391


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,690,580
Number of Sequences: 59808
Number of extensions: 267654
Number of successful extensions: 699
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)