Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0027
         (571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   1e-11
SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)                   66   1e-11
SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_16078| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_58081| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_39924| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_11499| Best HMM Match : C1_1 (HMM E-Value=1.5)                      27   8.2  

>SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 29/70 (41%), Positives = 41/70 (58%)
 Frame = +3

Query: 342 MVKEKPNSIRIYDDEGFRRRAACICVRSDAETEVLLVTSSRRPDNWIXXXXXXXXXXXXX 521
           M+K      R YD++G+ +RA C+C R++ E EVLLV+SS+ PD W+             
Sbjct: 83  MIKNSNKGSRTYDEDGYVKRAGCVCFRTELEKEVLLVSSSKHPDKWVVPAGGIEPGEEPK 142

Query: 522 XTAMREVLEE 551
            TA+REV EE
Sbjct: 143 ETAIREVQEE 152


>SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)
          Length = 169

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 29/70 (41%), Positives = 41/70 (58%)
 Frame = +3

Query: 342 MVKEKPNSIRIYDDEGFRRRAACICVRSDAETEVLLVTSSRRPDNWIXXXXXXXXXXXXX 521
           M+K      R YD++G+ +RA C+C R++ E EVLLV+SS+ PD W+             
Sbjct: 48  MIKNSNKGSRTYDEDGYVKRAGCVCFRTELEKEVLLVSSSKHPDKWVVPAGGIEPGEEPK 107

Query: 522 XTAMREVLEE 551
            TA+REV EE
Sbjct: 108 ETAIREVQEE 117


>SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -1

Query: 424 ERTQIHAARRLKPSSSYILIELGFSFTIFVCKHVNTNETNDHKINTDIN*KEKL*N 257
           +RT     R ++ +   +++  GF   +  CK  N +E N+ K N   N ++K  N
Sbjct: 53  DRTSTEPERSVRNALKAMILVYGFLQVLSHCKKQNASENNESKTNKSTNERKKCGN 108


>SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -1

Query: 328 HVNTNETNDHKINTDIN*KEKL*NEQNFLMINKRHIRCILCRTYPFSTI-KLHNVHKKSN 152
           H+     N+H + T IN    +    N  M+  RH   ++ R +    + ++HN +  + 
Sbjct: 44  HIMVTRINNHNMVTRINNHNMVTRIHNHNMVTSRHNHIMVTRAHNHIMVTRIHNHNMVTR 103

Query: 151 YNNNKTTIR 125
            +N+    R
Sbjct: 104 IHNHNMVTR 112


>SB_16078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 392

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -1

Query: 247 FLMINKRHIRC---ILCRTYPFSTIKLHNVHKKSNYNN-NKTT 131
           +  +N+R+ R    + CRT  F  +K  N H + +YNN N+T+
Sbjct: 325 YAALNERYARSFTRLFCRT--FKNLKSFNAHAEPSYNNVNQTS 365


>SB_58081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 295 FCDRSFRSCLRVCKQKW*RRSLIR*GYMTTRVLGDG 402
           FC      C   CK KW   + +R  Y TT+ +  G
Sbjct: 40  FCPHKLSECCSSCKSKW--TANLRYQYRTTQTISSG 73


>SB_39924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 503 LYSPARHNPVVGPSRRRHQ 447
           LY+PA  NP+  P  RRHQ
Sbjct: 103 LYAPAIKNPIALPFMRRHQ 121


>SB_11499| Best HMM Match : C1_1 (HMM E-Value=1.5)
          Length = 572

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 503 LYSPARHNPVVGPSRRRHQ 447
           LY+PA  NP+  P  RRHQ
Sbjct: 171 LYAPAIKNPIALPFMRRHQ 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,572,983
Number of Sequences: 59808
Number of extensions: 275463
Number of successful extensions: 710
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)