Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0026
(343 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0111 + 26552513-26553361 30 0.41
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462... 29 0.95
08_02_1631 + 28381248-28381418,28382069-28382144,28382925-283829... 28 1.7
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523... 27 3.9
08_01_0386 + 3424561-3425346 27 5.1
05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563 27 5.1
03_02_0875 + 12038365-12039329,12039417-12039593,12039651-120398... 27 5.1
08_02_0515 - 18047292-18047735 26 6.7
04_04_1542 - 34264994-34265331,34266195-34267029 26 6.7
02_05_0145 - 26262286-26262480,26262811-26262876,26263029-262631... 26 6.7
11_01_0311 + 2322511-2323527 26 8.9
09_06_0112 + 20928910-20929200,20929757-20929869,20929970-209300... 26 8.9
05_04_0220 - 19167485-19169290 26 8.9
04_04_0720 - 27543998-27544230,27544339-27544432,27544571-275448... 26 8.9
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 26 8.9
>01_06_0111 + 26552513-26553361
Length = 282
Score = 30.3 bits (65), Expect = 0.41
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 29 PGCRNSARGTIVVLCKNFSQPAVVSTSDISSSD 127
PGCR S G +++LC+ P +T+ I+ S+
Sbjct: 220 PGCRASTLGLLLLLCRYLLSPLPDATTSINGSN 252
>05_04_0389 -
20845490-20845600,20845697-20846006,20846097-20846242,
20846319-20846426,20846508-20846615,20846997-20847109,
20847340-20847437,20847530-20847714,20847811-20847953,
20848293-20848377,20848486-20848624,20848686-20848780,
20848894-20849037,20849114-20849206,20849310-20849376,
20849529-20849641,20849750-20849845,20853885-20854058
Length = 775
Score = 29.1 bits (62), Expect = 0.95
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -3
Query: 149 GRPGGCCR--RCSICHWC*PRPAVRSSCRGLRSCLVP 45
G P G CR R CH V+ SC G R C +P
Sbjct: 714 GNPVGDCRSFRIGSCHAESSESVVKQSCIGRRGCSIP 750
>08_02_1631 +
28381248-28381418,28382069-28382144,28382925-28382995,
28383375-28383460,28384359-28384423,28384727-28385067
Length = 269
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 227 PVPVSVQLTPLVARALRPS-VRSKEASGRPGGCCRRCSIC 111
P PVS+Q+TP A++P+ +G P CR S C
Sbjct: 208 PPPVSLQMTPRCFTAIKPTQAHGHRCTGTP---CRSVSAC 244
>02_05_0042 +
25351648-25351724,25351983-25352010,25352311-25352373,
25352880-25352945,25353029-25353076,25353338-25353379,
25353499-25353714,25354066-25354188,25354352-25354564,
25354930-25355016,25355259-25355507,25356386-25356507,
25357135-25357225,25358467-25358882,25359489-25359609
Length = 653
Score = 27.1 bits (57), Expect = 3.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 161 KEASGRPGGCCRRCSICH 108
K+ SG+P GC + CS+ H
Sbjct: 547 KDDSGKPEGCLQGCSLLH 564
>08_01_0386 + 3424561-3425346
Length = 261
Score = 26.6 bits (56), Expect = 5.1
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -3
Query: 188 RALRPSVRSKEASGRPGGCCRRCSICHWC*PRPAVRSS--CRGLRS 57
+ L V S + + RRCS+ +W R VRS CR LRS
Sbjct: 147 KKLAAVVSSSASIAKSDTAARRCSMGYWVDLRWRVRSPDFCRALRS 192
>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
Length = 571
Score = 26.6 bits (56), Expect = 5.1
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = -3
Query: 242 VYYPLPVPVSVQLTP---LVARALRPSVRSKEASGRPGGCCRRCSICHWC*PRPAVRSS 75
VY P P PVS TP VA + R + A R G CH P PA R++
Sbjct: 212 VYSPYPHPVSPSYTPGHTPVASSRRGPRFIRTARKRVVGSSTVFRFCHPAPPPPAARAA 270
>03_02_0875 +
12038365-12039329,12039417-12039593,12039651-12039893,
12040045-12040124,12040242-12040508,12040599-12040710,
12040757-12041071,12041357-12041366
Length = 722
Score = 26.6 bits (56), Expect = 5.1
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -3
Query: 230 LPVPVSVQLTPLVARALRPSVRSKEASGRPGGCCRRCSICHWC*PRPAVRSSCRG 66
LP P + +P V A P + S++ SGR C S W +P RS+ G
Sbjct: 64 LPPPQAASSSPTVPAAHSPFLLSRQNSGR----CPAPSPSSWAQAQPFSRSNSMG 114
>08_02_0515 - 18047292-18047735
Length = 147
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 26 SPGCRNSARGTIVVLCKNFSQPAVVSTSDISSSD-GNNHQAV 148
SPG +S G + N +QP+ +D S SD G+N + V
Sbjct: 83 SPGTGSSKDGEVKQALGNSAQPSTKGATDGSPSDQGDNSEGV 124
>04_04_1542 - 34264994-34265331,34266195-34267029
Length = 390
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 266 HSHNHRTWVYYPLPVPVSVQLTPLVARALRPSVRSKE 156
H H H P P P S+QL P V SV ++E
Sbjct: 245 HHHGHHHHPPPPQPPPSSLQLPPAVVAPPPASVSAEE 281
>02_05_0145 -
26262286-26262480,26262811-26262876,26263029-26263125,
26263283-26263341,26263372-26263532,26264039-26264087,
26264142-26264205,26264294-26264469
Length = 288
Score = 26.2 bits (55), Expect = 6.7
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -1
Query: 304 LTVSYVTRLQCKFTHIITALG 242
L S ++ L+CKF+H++ +G
Sbjct: 257 LGTSQISNLRCKFSHVVCKIG 277
>11_01_0311 + 2322511-2323527
Length = 338
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 196 LWLGHYDPRCARKKPLDGLVVVAVAARYV 110
L YDP + +P+ G VVAVA+ V
Sbjct: 148 LTAARYDPAASSPEPVSGYYVVAVASAEV 176
>09_06_0112 +
20928910-20929200,20929757-20929869,20929970-20930036,
20930117-20930209,20930306-20930449,20930613-20930704,
20930986-20931091,20931187-20931271,20931373-20931491,
20931579-20931746,20931850-20932031,20932153-20932262,
20932351-20932460,20932708-20932815,20933007-20933108,
20933219-20933364,20933456-20933801,20934115-20934213,
20934603-20934656,20934700-20934786,20935305-20935418
Length = 911
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Frame = -3
Query: 149 GRPGGCCRR--CSICHWC*PRPAVRSSCRGLRSCLVP 45
G P G C CH + V C G SC++P
Sbjct: 769 GNPEGACGNFTAGTCHTPDAKAIVEKECLGKESCVLP 805
>05_04_0220 - 19167485-19169290
Length = 601
Score = 25.8 bits (54), Expect = 8.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 44 NSCSPGIHYSRAP 6
N C+ G+HY RAP
Sbjct: 558 NRCNDGVHYGRAP 570
>04_04_0720 -
27543998-27544230,27544339-27544432,27544571-27544898,
27545387-27545850
Length = 372
Score = 25.8 bits (54), Expect = 8.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 170 VRSKEASGRPGGCCRRCSICHWC*PRPAVRSSCRGLRSCLVPNSCS 33
VR +S GG ++ RPA R+ R LR+ P +CS
Sbjct: 40 VRLAGSSSLRGGAALSPAVSISSGSRPATRAGARALRAASPPPACS 85
>01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 25.8 bits (54), Expect = 8.9
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -3
Query: 197 LVARALRPSVRSKEASGRPGGCCRRCSICHWC*PRPAVRSSCR---GLRSCLVPNSCS 33
LV ++P++ ++ G C R CH+ A R C+ L+ C NSCS
Sbjct: 972 LVHGYVQPALENEMCVFFLNGSCNRGDTCHFSHSSRAPRPICKFFLTLQGCRNGNSCS 1029
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,626,172
Number of Sequences: 37544
Number of extensions: 195486
Number of successful extensions: 552
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -