Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0025
(563 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 144 6e-36
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 73 3e-14
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 72 5e-14
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 62 4e-11
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 58 1e-09
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 54 1e-08
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 54 2e-08
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 50 2e-07
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 49 4e-07
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 49 4e-07
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 48 1e-06
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 48 1e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 44 2e-05
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 43 3e-05
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 43 3e-05
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 42 6e-05
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 41 1e-04
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 40 3e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 4e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 39 6e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 39 6e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 8e-04
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 37 0.002
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 36 0.003
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 34 0.017
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.038
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 33 0.038
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 29 0.62
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 28 0.82
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 28 0.82
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.1
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 28 1.1
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 28 1.1
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 3.3
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 3.3
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 25 7.7
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 25 7.7
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 7.7
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 144 bits (350), Expect = 6e-36
Identities = 66/99 (66%), Positives = 84/99 (84%), Gaps = 1/99 (1%)
Frame = +3
Query: 21 EQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVC 197
EQ+K E++ +YQGVNL++KNL D +DDERL+ EF+ FGTITSAK+M E G+SKGFGFVC
Sbjct: 351 EQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVC 410
Query: 198 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 314
+++PEEA KAVTEMN R++ KPLYVALAQRKE R++ L
Sbjct: 411 YTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQL 449
Score = 68.9 bits (161), Expect = 5e-13
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 239
N+++KNLD ID++ L F+ FG I S KV +++ G +KG+GFV F S E A A+ +
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 240 NGRIVGTKPLYVALAQRKEDRKA 308
NG ++ K +YV + +R++
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQS 251
Score = 68.1 bits (159), Expect = 8e-13
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Frame = +3
Query: 12 STREQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG-RSKGFG 188
S RE+ + N+Y+KNLD I ++ F FG ITS ++ + + +GFG
Sbjct: 245 SRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFG 304
Query: 189 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 314
FV +++ E A KAV E+N + K LYV AQ+K +R+ L
Sbjct: 305 FVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEEL 346
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 72.9 bits (171), Expect = 3e-14
Identities = 39/84 (46%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Frame = +3
Query: 63 NLYVKNLDDTIDD--ERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 230
NLYVKNLDDT+ +L F+PFG+I S+ + G SKG+GFV F E A +A
Sbjct: 383 NLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAK 442
Query: 231 TEMNGRIVGTKPLYVALAQRKEDR 302
+NG +VG K ++V A+RK DR
Sbjct: 443 DTLNGMMVGKKRIFVCFAERKSDR 466
Score = 29.9 bits (64), Expect = 0.27
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG-----RSKGF---------GFVCFS 203
+YV N+D + DE + K F+ +G + S L D ++K F GFV F
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFV 78
Query: 204 SPEEATKAVTEMNGRIVGTKPLYV 275
+ E + + + G +G + L +
Sbjct: 79 NAESIEEVLKDAKGMTLGQRKLTI 102
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 72.1 bits (169), Expect = 5e-14
Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Frame = +3
Query: 63 NLYVKNLDDTI--DDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAV 230
NL+VKNLDD I + ++L + F+ FG I S + SKG+GFV FS P EA +A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 231 TEMNGRIVGTKPLYVALAQRKEDRKAHLT 317
+NG + G K L+V A+++EDRK L+
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLS 508
Score = 35.5 bits (78), Expect = 0.005
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Frame = +3
Query: 30 KSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGT------ITSAKVMLEDGRSKG-FG 188
K++R T+ +++YV NL T L + F PFG ++ K D +S F
Sbjct: 10 KNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFA 69
Query: 189 FVCFSSPEEATKAVTEMNG 245
F+ F + A A+ +NG
Sbjct: 70 FITFENKCSADNAIASLNG 88
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 62.5 bits (145), Expect = 4e-11
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 230
G NL+V NLD +D+ L F+ G + A + D GRSKG+GFV + S E A A+
Sbjct: 98 GANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAI 157
Query: 231 TEMNGRIVGTKPLYVALAQRKEDR 302
MN + + KP+ V+ A ++E +
Sbjct: 158 EAMNNQFLMNKPITVSYAFKREGK 181
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 57.6 bits (133), Expect = 1e-09
Identities = 25/74 (33%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 242
L+V NL + ++DE L + F+ + ++ KV+ + +G+++GFGFV F ++ KA E N
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91
Query: 243 GRIVGTKPLYVALA 284
G+ +G++P+ ++ A
Sbjct: 92 GKYIGSRPVKLSRA 105
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 54.4 bits (125), Expect = 1e-08
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 230
G +L+V + + ++ L++ F+ FGT+T ++M E S+GFGF+ FS+ EEAT A+
Sbjct: 100 GNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAI 159
Query: 231 TEMNGRIVGTKPLYVALAQR 290
+N + + L V A+R
Sbjct: 160 DNLNSQEFYGRVLNVQKAKR 179
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 53.6 bits (123), Expect = 2e-08
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 7/70 (10%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVT-- 233
++V L +DD+ L +EF +GTI A+V++ + GRSKG+G+V F +PE A AV
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 234 ---EMNGRIV 254
E++GR+V
Sbjct: 325 GTKEIDGRMV 334
Score = 42.7 bits (96), Expect = 4e-05
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
++V NL ++ L F G I S ++ + GR KGFG+V FS + A K V EM
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EM 426
Query: 240 NGRIVGTKP 266
NG + +P
Sbjct: 427 NGHFIAGRP 435
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 50.4 bits (115), Expect = 2e-07
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 242
+YV NL D L F G++ A++ E GRSKGFG V F + +A ++ ++N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 243 GRIVGTKPLYVALA 284
G G +PL ++ A
Sbjct: 342 GYRYGGRPLQLSYA 355
Score = 31.1 bits (67), Expect = 0.12
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 108 LRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 284
L+ F G++ A + + ++GRS+G G V SS +EA A+ ++ + L V L
Sbjct: 199 LKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRL- 257
Query: 285 QRKEDRKAH 311
DR AH
Sbjct: 258 ----DRFAH 262
Score = 30.3 bits (65), Expect = 0.20
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAV-TEM 239
+YV NL + L++ G + + +++ L +G SKG + +S+ EEA A+ T
Sbjct: 68 VYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLS 127
Query: 240 NGRIVG 257
N + +G
Sbjct: 128 NQKFMG 133
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 49.2 bits (112), Expect = 4e-07
Identities = 23/82 (28%), Positives = 48/82 (58%)
Frame = +3
Query: 51 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 230
Y+G LYV N+D ++++ + F +G + S ++ + KGFG+V ++ ++A A+
Sbjct: 754 YEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENAL 813
Query: 231 TEMNGRIVGTKPLYVALAQRKE 296
+ G+ +G + L V L++ +E
Sbjct: 814 SAA-GKQLGNRVLNVVLSKPRE 834
Score = 28.3 bits (60), Expect = 0.82
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 242
+L V N+D T+++ RLR F +G + +V+L +G V F +A KA +
Sbjct: 875 SLGVTNVDGTVNEARLRSLFESYGKL--YRVVLHP-EHEG-AVVEFLDIHDAGKASLALE 930
Query: 243 GRIVGTKPLYV 275
G +G + L++
Sbjct: 931 GHEIGGRLLHI 941
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 49.2 bits (112), Expect = 4e-07
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Frame = +3
Query: 27 LKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLEDGR--SKGFGFVC 197
L+ + +++ +++V +L +++ + FA + + SAK+M + S+G+GFV
Sbjct: 175 LREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVR 234
Query: 198 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 314
F+ + A+ EM G+I G +P+ V LA K KAH+
Sbjct: 235 FTDENDQKSALAEMQGQICGDRPIRVGLATPKS--KAHV 271
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 48.0 bits (109), Expect = 1e-06
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 242
L V N+ + DE ++ F PFG I + +D RSKGFG++ + +P A A+ +MN
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMN 401
Query: 243 GRIVGTKPLYVALAQRK 293
G + + + V L K
Sbjct: 402 GFDLAGRNMRVCLGNDK 418
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 48.0 bits (109), Expect = 1e-06
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +3
Query: 72 VKNLDDTIDDERLR---KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 242
+K + D + R R + P+ I K+ E R +GFGFV F++ E+ ++A+ EMN
Sbjct: 221 LKEMFDAYNPTRARIAVRSLPPY-IIRRIKLRGEQRRGRGFGFVSFANAEDQSRAIEEMN 279
Query: 243 GRIVGTKPLYVALAQRKEDRK 305
G+ VG L V A +ED++
Sbjct: 280 GKQVGDLTLVVKSAVFREDKQ 300
Score = 30.7 bits (66), Expect = 0.15
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS------KGFGFVCFSSPEEATKA 227
++V L + +R F GT+ + R G FV F++ E+ KA
Sbjct: 46 VFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKA 105
Query: 228 VTEMNGRIVGTKPLYVALAQRKEDR 302
+ +NG+ + + + V A+ +++
Sbjct: 106 IETLNGKTLDDREIVVQKARPVQEQ 130
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 44.0 bits (99), Expect = 2e-05
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Frame = +3
Query: 9 SSTREQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-----GR 173
++T E++ +E + +YVKNL+ + E +K F P SA + + G+
Sbjct: 602 ATTSEKVGTEDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGK 661
Query: 174 --SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 314
S GFGFV F A A+ MNG ++ L + L+ + D A +
Sbjct: 662 YLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEV 710
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
L+++NL + ++ L+ F PFG + + ++ KGF ++ F ++A +A E+
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 240 NGRIVGTKPLYVALAQRK 293
+ + + L+V A+ +
Sbjct: 385 DAKPFQGRLLHVLPAKAR 402
Score = 30.3 bits (65), Expect = 0.20
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPF----GTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAV 230
+ +KN+ D E+L IT V ++G S+ F F+ F + E+A KA+
Sbjct: 4 IIIKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADKAI 63
Query: 231 TEMNGRIVGTKPLYV--ALAQRKEDRK 305
+N V T + V AL R + K
Sbjct: 64 RYLNKSYVETSRIEVHRALDYRSANEK 90
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 43.2 bits (97), Expect = 3e-05
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 236
++YV N+D ++ E L+ FA G++ ++ + G KGF ++ FS P A+
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL- 114
Query: 237 MNGRIVGTKPLYV 275
+NG ++ +PL V
Sbjct: 115 LNGSMLHERPLKV 127
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 43.2 bits (97), Expect = 3e-05
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Frame = +3
Query: 9 SSTREQLKSERLTRYQGVN--LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG 182
+ST + ++ L +N ++V L + ++ L+ F PFG I + K+ KG
Sbjct: 278 TSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPF----GKG 333
Query: 183 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 278
GFV +S A KA+ M G +VGT + +A
Sbjct: 334 CGFVQYSEKSAAEKAINTMQGALVGTSHIRLA 365
Score = 42.3 bits (95), Expect = 5e-05
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 233
+++V +L T +D L F + + TSAK++++ G S+ +GFV FSS +E A+
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 234 EMNGRIVGTKPLYVALAQRK 293
M G + +PL +++A K
Sbjct: 243 HMQGYLCQGRPLRISVASPK 262
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 41.9 bits (94), Expect = 6e-05
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 239
+Y+ NL + ++++ + PFG + S +++ + DG SKGF F F +P +A A++ +
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 240 NGR 248
+G+
Sbjct: 372 DGK 374
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 40.7 bits (91), Expect = 1e-04
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE- 236
+++ L+ D+ LR F FG + VM + GRS+GFGF+ F +P+ + +++
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224
Query: 237 --MNGRIVGTK 263
++G+I+ K
Sbjct: 225 HHLDGKIIDPK 235
Score = 36.7 bits (81), Expect = 0.002
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 239
++V + +E R F FG + A +M++ GR +GFGFV + + E A +A
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQ 307
Query: 240 NGRIVGTKPLYVALAQRKED-RKAH 311
+ KP+ V A K R +H
Sbjct: 308 PYITIHGKPVEVKRATPKASLRDSH 332
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 39.5 bits (88), Expect = 3e-04
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 236
N+Y++ L DE L FG ++S+K ++ E KG+GF CF + A ++
Sbjct: 297 NVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISA 356
Query: 237 M 239
M
Sbjct: 357 M 357
Score = 29.1 bits (62), Expect = 0.47
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 233
+ NLY+ NL ++ + F P I++ + +S+G GF + A +
Sbjct: 382 ESTNLYISNLPLHWNESDISTLFKPSKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIIN 441
Query: 234 EMNGRIV--GTKPLYVALAQRKEDRK 305
+ N ++ PL + A + +K
Sbjct: 442 KFNNFVLDPALPPLQIRFADSTDQKK 467
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 39.1 bits (87), Expect = 4e-04
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
+YV N+ + +E++ F G + S ++++ E G+ KG+GF + P A AV +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 240 NGRIVGTKPLYV 275
N GT+ L V
Sbjct: 67 NNYDAGTRRLRV 78
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 38.7 bits (86), Expect = 6e-04
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LED-GRSKGFGFVCFSSPEEATKAV 230
L+V NLD D L++ F G I ++M ED G+ KGFGFV F + KA+
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAM 286
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 38.7 bits (86), Expect = 6e-04
Identities = 30/84 (35%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +3
Query: 3 RRSSTREQLKSE-RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGR 173
R S RE S + R L V NL D +E LR F FG I + E GR
Sbjct: 182 RAGSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGR 241
Query: 174 SKGFGFVCFSSPEEATKAVTEMNG 245
+KGF FV + + A KA ++G
Sbjct: 242 AKGFAFVSYYDRDCAIKARDRLDG 265
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 38.3 bits (85), Expect = 8e-04
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATK 224
+G+ + ++ +D K G + AKV E GRSKGFGF+ F S + A
Sbjct: 495 KGLRANITEEEENLDKGHRLKRGKSGGVLKQAKVETEKAGAGRSKGFGFMQFISHKYALM 554
Query: 225 AVTEMNGRIVGTKPL 269
A+ +NGR + K +
Sbjct: 555 ALRWLNGREITVKKI 569
Score = 37.5 bits (83), Expect = 0.001
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDD-ERLRKEFAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVTEM 239
L ++NL +I + L F+ FG + K+ + G R GF FV + A +A+ +
Sbjct: 109 LIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSL 168
Query: 240 NGRIVGTKPLYVALAQRKE 296
NG + +P+ V A K+
Sbjct: 169 NGTEIDGRPIAVDWAVSKD 187
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 36.7 bits (81), Expect = 0.002
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 230
N+Y+ N DD++ ERL+++F FG I R K FV F+S A A+
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEIEYVNFF----REKNCAFVNFTSLASAINAI 466
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 36.3 bits (80), Expect = 0.003
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 165 DGRSKGFGFVCFSSPEEATKAVTEMNGRIV-GTKPLYVAL 281
+GRSKG + FS P +AT+A + GR+V GT+ + V +
Sbjct: 92 NGRSKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 33.9 bits (74), Expect = 0.017
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 242
LYV D + L EF PFG + + + R S+ F FV + +A A E++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 243 GR 248
GR
Sbjct: 69 GR 70
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 32.7 bits (71), Expect = 0.038
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 227
+G + V + +E++ FA FG + + + L+ G KG+ + +++ E+A KA
Sbjct: 8 EGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKA 67
Query: 228 VTEMNGRIVGTK 263
V E N ++ K
Sbjct: 68 VDEKNLSLLDEK 79
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 32.7 bits (71), Expect = 0.038
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
+Y+ NLD ++++ + F+ FG ++ E G+SKGF F+ + AV M
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 28.7 bits (61), Expect = 0.62
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTIT--SAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 239
+ VKN+ +++ + L F G + ++G +G F F PEEA V +
Sbjct: 204 IVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQTL 263
Query: 240 NGRIVGTKPLYV 275
NG + + L V
Sbjct: 264 NGYEINGRRLRV 275
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 28.3 bits (60), Expect = 0.82
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +3
Query: 417 PAPRYYGPAQMTQIRPTTPRWNAQPPVRP-STQAASGHIANFMQP-TYRPA 563
P+P YY P P W+ VR S+ A GH + QP T PA
Sbjct: 29 PSPNYYYPPVAQGHYPVNNMWSLPSNVRVISSHGAPGHQTSASQPSTVMPA 79
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 28.3 bits (60), Expect = 0.82
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTIT--SAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 239
+ +KN+ ++ E L K F + ++G +G F F SPEEA V +
Sbjct: 234 IVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQVL 293
Query: 240 NG 245
NG
Sbjct: 294 NG 295
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSA--KVMLEDGRSKGFGFVCFSSPEEATKAVTEM 239
+ V+NL + E + + F +G I + + +KG+ ++ + ++A AV +M
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 240 NGRIVGTKPLYVAL 281
N + + L+V++
Sbjct: 161 NNAELDGEELFVSI 174
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 27.9 bits (59), Expect = 1.1
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 325 TCREWLVCACSKWAKYSSLVVQVDFLYHRSLQH 423
T + +C C + ++ ++VQV LY ++L H
Sbjct: 288 TYENYYLCECDAFFLFTQMMVQVRDLYEKTLDH 320
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = +3
Query: 6 RSSTREQLKSERLTRYQGVNLYVKNLDDTIDDERLR-----KEFAPFGTITSAKVMLEDG 170
R++ ++Q++ E + +NLY + DD D+E + + PF + S K ++ DG
Sbjct: 188 RAAFKQQIREEFVKH--DINLYPYDSDDA-DEEEINLNAAVRNLIPFAVVGSEKAIIVDG 244
Query: 171 R 173
R
Sbjct: 245 R 245
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/52 (25%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +3
Query: 138 ITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 287
+TS +++++ RS+GFG+V F + + + A+ ++G + +P+ + +A+
Sbjct: 118 VTSIRLVIDPLTERSRGFGYVEFETADTLSAALA-LSGEDLMGRPVRITVAE 168
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEE 215
+YV L +I+ L F+ FG++++ +++ + G + F ++ F + E+
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDED 59
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 387 ASGFFVPSLPPAPRYYGPAQMTQIRPTTP 473
A+GF +P L P +GP + QI P
Sbjct: 2 ATGFKLPELAPVKSAWGPPETEQIGGDIP 30
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 15 TREQLKSERLTRYQGVNLYVKN 80
T E++K+ +RY V+LY+ N
Sbjct: 371 TEEEMKTVPKSRYDSVDLYISN 392
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 297 PPCVELVQHTMV*FLQYVHSS 235
PP +E +Q T + LQYVH +
Sbjct: 732 PPQLENIQGTTIQLLQYVHDN 752
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,506
Number of Sequences: 5004
Number of extensions: 45273
Number of successful extensions: 187
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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