Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0018
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ...    29   1.0  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    27   2.3  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    27   2.3  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    26   7.1  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.4  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   9.4  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.4  

>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 470 VIPGNAL-VVDPKKQFRPLSKFGNAFLNRFQCSTVTSDVLR 589
           V+P  +L     KK F P+S  GN F  RFQ   + S  +R
Sbjct: 6   VVPFQSLRTAFQKKTFLPVSSAGNVFTPRFQLQAIRSIWIR 46


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 552 RFRKALPNLLNGRNCFFGSTTNALPGITPS 463
           RFRK  P+L NG N    ST++ L  I  S
Sbjct: 3   RFRKVAPSLKNGGNLKLFSTSSTLKKIASS 32


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -1

Query: 786 LSSCPLNASILRLNSSDISSL*ASNKSMIRSTRSANHSNTPVKSYPRSTR 637
           LS+ PL     +L  S  ++   SN   +  + S + +N P++SY R+T+
Sbjct: 351 LSAQPLELPSQQLLRSQSNAALRSNSLSMNGSLSPSSTNVPLQSYRRTTK 400


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -1

Query: 654 YPRSTRCFSPDRIPGVSTIEIPRS-TSDVTVE-HWNRFRKALPNLLNGRNCFFGSTTNAL 481
           YPRS  CF P     V   E+P S T   +++    R    L  L++  + F G +T  +
Sbjct: 181 YPRSMECFYPGEY--VYNFELPISCTYPESIQTDMGRVYYFLETLVDRSSTFSGKSTGRI 238

Query: 480 P 478
           P
Sbjct: 239 P 239


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 93  KKLKRHEALIHSLHHFCIRFITNPQRL 13
           K LK+H+  + SL     +F  NP++L
Sbjct: 242 KILKKHDNAVRSLEAVLAKFFKNPKKL 268


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -1

Query: 639 RCFSPDRIPGVSTIEIPRS---TSDVTVEHWNRFRKALPNLLNGR 514
           R  SP+ +  + T  I +    T+D     WN F K   NL NGR
Sbjct: 4   RVVSPNPMLSLETENIAKMGTLTADSLGSMWNVFTKCAENLENGR 48


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 783 SSCPLNASILRLNSSDISSL*ASNKSMIRSTRSANHSNTPVKS 655
           S+   N  +      DI+ +   ++S +    S+NHS+T VKS
Sbjct: 604 SNLATNEDVTNSGMPDIADVSLKSQSHVPPRISSNHSDTSVKS 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,157,812
Number of Sequences: 5004
Number of extensions: 64752
Number of successful extensions: 205
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)