Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0018
(792 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF357878-1|AAK27716.1| 589|Caenorhabditis elegans receptor-medi... 241 3e-64
AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 241 3e-64
AF357876-1|AAK27714.1| 576|Caenorhabditis elegans receptor-medi... 241 3e-64
AC006695-15|AAO25981.1| 555|Caenorhabditis elegans Receptor med... 241 3e-64
AC006695-14|AAK73902.2| 576|Caenorhabditis elegans Receptor med... 241 3e-64
AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor med... 241 3e-64
AC006695-12|AAL65796.1| 613|Caenorhabditis elegans Receptor med... 241 3e-64
AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor med... 241 3e-64
AC006695-10|AAF39980.1| 589|Caenorhabditis elegans Receptor med... 241 3e-64
U13875-6|AAK67213.1| 390|Caenorhabditis elegans Hypothetical pr... 32 0.54
L14745-12|AAR25659.1| 366|Caenorhabditis elegans Hypothetical p... 30 1.7
Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical p... 29 3.8
AL117206-4|CAB60447.1| 447|Caenorhabditis elegans Hypothetical ... 28 8.8
>AF357878-1|AAK27716.1| 589|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform I protein.
Length = 589
Score = 241 bits (591), Expect = 3e-64
Identities = 116/146 (79%), Positives = 127/146 (86%)
Frame = +2
Query: 353 GKTDIYSGICLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQFRPLSKF 532
GKT + LE DFPGIRIGPEPTTDRFIAVM ++EG IPGNALVVD KKQFR LS F
Sbjct: 104 GKTTFIRYL-LESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKQFRALSGF 162
Query: 533 GNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILL 712
GNAFLNRFQCST+ + VL ++IVDTPGILSGEKQR+DRGYDFTGVLEWFAERVDRIILL
Sbjct: 163 GNAFLNRFQCSTLPNQVLESVTIVDTPGILSGEKQRIDRGYDFTGVLEWFAERVDRIILL 222
Query: 713 FDAHKLDISDEFRRSIEALRGHDDKI 790
FDAHKLDISDEF+R IEAL G++DKI
Sbjct: 223 FDAHKLDISDEFKRCIEALAGNEDKI 248
>AF357877-1|AAK27715.1| 835|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform II protein.
Length = 835
Score = 241 bits (591), Expect = 3e-64
Identities = 116/146 (79%), Positives = 127/146 (86%)
Frame = +2
Query: 353 GKTDIYSGICLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQFRPLSKF 532
GKT + LE DFPGIRIGPEPTTDRFIAVM ++EG IPGNALVVD KKQFR LS F
Sbjct: 350 GKTTFIRYL-LESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKQFRALSGF 408
Query: 533 GNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILL 712
GNAFLNRFQCST+ + VL ++IVDTPGILSGEKQR+DRGYDFTGVLEWFAERVDRIILL
Sbjct: 409 GNAFLNRFQCSTLPNQVLESVTIVDTPGILSGEKQRIDRGYDFTGVLEWFAERVDRIILL 468
Query: 713 FDAHKLDISDEFRRSIEALRGHDDKI 790
FDAHKLDISDEF+R IEAL G++DKI
Sbjct: 469 FDAHKLDISDEFKRCIEALAGNEDKI 494
>AF357876-1|AAK27714.1| 576|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform IV protein.
Length = 576
Score = 241 bits (591), Expect = 3e-64
Identities = 116/146 (79%), Positives = 127/146 (86%)
Frame = +2
Query: 353 GKTDIYSGICLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQFRPLSKF 532
GKT + LE DFPGIRIGPEPTTDRFIAVM ++EG IPGNALVVD KKQFR LS F
Sbjct: 86 GKTTFIRYL-LESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKQFRALSGF 144
Query: 533 GNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILL 712
GNAFLNRFQCST+ + VL ++IVDTPGILSGEKQR+DRGYDFTGVLEWFAERVDRIILL
Sbjct: 145 GNAFLNRFQCSTLPNQVLESVTIVDTPGILSGEKQRIDRGYDFTGVLEWFAERVDRIILL 204
Query: 713 FDAHKLDISDEFRRSIEALRGHDDKI 790
FDAHKLDISDEF+R IEAL G++DKI
Sbjct: 205 FDAHKLDISDEFKRCIEALAGNEDKI 230
>AC006695-15|AAO25981.1| 555|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform f protein.
Length = 555
Score = 241 bits (591), Expect = 3e-64
Identities = 116/146 (79%), Positives = 127/146 (86%)
Frame = +2
Query: 353 GKTDIYSGICLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQFRPLSKF 532
GKT + LE DFPGIRIGPEPTTDRFIAVM ++EG IPGNALVVD KKQFR LS F
Sbjct: 70 GKTTFIRYL-LESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKQFRALSGF 128
Query: 533 GNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILL 712
GNAFLNRFQCST+ + VL ++IVDTPGILSGEKQR+DRGYDFTGVLEWFAERVDRIILL
Sbjct: 129 GNAFLNRFQCSTLPNQVLESVTIVDTPGILSGEKQRIDRGYDFTGVLEWFAERVDRIILL 188
Query: 713 FDAHKLDISDEFRRSIEALRGHDDKI 790
FDAHKLDISDEF+R IEAL G++DKI
Sbjct: 189 FDAHKLDISDEFKRCIEALAGNEDKI 214
>AC006695-14|AAK73902.2| 576|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform d protein.
Length = 576
Score = 241 bits (591), Expect = 3e-64
Identities = 116/146 (79%), Positives = 127/146 (86%)
Frame = +2
Query: 353 GKTDIYSGICLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQFRPLSKF 532
GKT + LE DFPGIRIGPEPTTDRFIAVM ++EG IPGNALVVD KKQFR LS F
Sbjct: 86 GKTTFIRYL-LESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKQFRALSGF 144
Query: 533 GNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILL 712
GNAFLNRFQCST+ + VL ++IVDTPGILSGEKQR+DRGYDFTGVLEWFAERVDRIILL
Sbjct: 145 GNAFLNRFQCSTLPNQVLESVTIVDTPGILSGEKQRIDRGYDFTGVLEWFAERVDRIILL 204
Query: 713 FDAHKLDISDEFRRSIEALRGHDDKI 790
FDAHKLDISDEF+R IEAL G++DKI
Sbjct: 205 FDAHKLDISDEFKRCIEALAGNEDKI 230
>AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform a protein.
Length = 786
Score = 241 bits (591), Expect = 3e-64
Identities = 116/146 (79%), Positives = 127/146 (86%)
Frame = +2
Query: 353 GKTDIYSGICLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQFRPLSKF 532
GKT + LE DFPGIRIGPEPTTDRFIAVM ++EG IPGNALVVD KKQFR LS F
Sbjct: 301 GKTTFIRYL-LESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKQFRALSGF 359
Query: 533 GNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILL 712
GNAFLNRFQCST+ + VL ++IVDTPGILSGEKQR+DRGYDFTGVLEWFAERVDRIILL
Sbjct: 360 GNAFLNRFQCSTLPNQVLESVTIVDTPGILSGEKQRIDRGYDFTGVLEWFAERVDRIILL 419
Query: 713 FDAHKLDISDEFRRSIEALRGHDDKI 790
FDAHKLDISDEF+R IEAL G++DKI
Sbjct: 420 FDAHKLDISDEFKRCIEALAGNEDKI 445
>AC006695-12|AAL65796.1| 613|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform e protein.
Length = 613
Score = 241 bits (591), Expect = 3e-64
Identities = 116/146 (79%), Positives = 127/146 (86%)
Frame = +2
Query: 353 GKTDIYSGICLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQFRPLSKF 532
GKT + LE DFPGIRIGPEPTTDRFIAVM ++EG IPGNALVVD KKQFR LS F
Sbjct: 128 GKTTFIRYL-LESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKQFRALSGF 186
Query: 533 GNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILL 712
GNAFLNRFQCST+ + VL ++IVDTPGILSGEKQR+DRGYDFTGVLEWFAERVDRIILL
Sbjct: 187 GNAFLNRFQCSTLPNQVLESVTIVDTPGILSGEKQRIDRGYDFTGVLEWFAERVDRIILL 246
Query: 713 FDAHKLDISDEFRRSIEALRGHDDKI 790
FDAHKLDISDEF+R IEAL G++DKI
Sbjct: 247 FDAHKLDISDEFKRCIEALAGNEDKI 272
>AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform b protein.
Length = 835
Score = 241 bits (591), Expect = 3e-64
Identities = 116/146 (79%), Positives = 127/146 (86%)
Frame = +2
Query: 353 GKTDIYSGICLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQFRPLSKF 532
GKT + LE DFPGIRIGPEPTTDRFIAVM ++EG IPGNALVVD KKQFR LS F
Sbjct: 350 GKTTFIRYL-LESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKQFRALSGF 408
Query: 533 GNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILL 712
GNAFLNRFQCST+ + VL ++IVDTPGILSGEKQR+DRGYDFTGVLEWFAERVDRIILL
Sbjct: 409 GNAFLNRFQCSTLPNQVLESVTIVDTPGILSGEKQRIDRGYDFTGVLEWFAERVDRIILL 468
Query: 713 FDAHKLDISDEFRRSIEALRGHDDKI 790
FDAHKLDISDEF+R IEAL G++DKI
Sbjct: 469 FDAHKLDISDEFKRCIEALAGNEDKI 494
>AC006695-10|AAF39980.1| 589|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform c protein.
Length = 589
Score = 241 bits (591), Expect = 3e-64
Identities = 116/146 (79%), Positives = 127/146 (86%)
Frame = +2
Query: 353 GKTDIYSGICLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQFRPLSKF 532
GKT + LE DFPGIRIGPEPTTDRFIAVM ++EG IPGNALVVD KKQFR LS F
Sbjct: 104 GKTTFIRYL-LESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKQFRALSGF 162
Query: 533 GNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILL 712
GNAFLNRFQCST+ + VL ++IVDTPGILSGEKQR+DRGYDFTGVLEWFAERVDRIILL
Sbjct: 163 GNAFLNRFQCSTLPNQVLESVTIVDTPGILSGEKQRIDRGYDFTGVLEWFAERVDRIILL 222
Query: 713 FDAHKLDISDEFRRSIEALRGHDDKI 790
FDAHKLDISDEF+R IEAL G++DKI
Sbjct: 223 FDAHKLDISDEFKRCIEALAGNEDKI 248
>U13875-6|AAK67213.1| 390|Caenorhabditis elegans Hypothetical
protein C26E6.12 protein.
Length = 390
Score = 31.9 bits (69), Expect = 0.54
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +2
Query: 593 ISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE----FRRSI 760
+SI D PGI+ G +GY F LE+ D ++++ D + +E FR +
Sbjct: 219 LSIADLPGIIEGASMNRGKGYKFLKHLEY----ADIVVMVVDCQGFQLKNELDCPFRNPL 274
Query: 761 EAL 769
E++
Sbjct: 275 ESI 277
>L14745-12|AAR25659.1| 366|Caenorhabditis elegans Hypothetical
protein C02F5.3 protein.
Length = 366
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 593 ISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD 733
I ++D PGI+ G Q RG V A+ D I+++ DA K D
Sbjct: 111 IQLLDLPGIIEGASQGKGRGRQVISV----AKTADLILMMLDAGKSD 153
>Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical
protein Y69H2.12 protein.
Length = 528
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 448 NGYKSICSRLWTNTD 404
NGY+ IC LWT+TD
Sbjct: 340 NGYQCICGPLWTDTD 354
>AL117206-4|CAB60447.1| 447|Caenorhabditis elegans Hypothetical
protein Y67A10A.6 protein.
Length = 447
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +3
Query: 177 CRGTGSQRNFTKLKLF 224
C GTGS RN+T++K++
Sbjct: 273 CSGTGSVRNYTRIKVY 288
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,325,810
Number of Sequences: 27780
Number of extensions: 356888
Number of successful extensions: 850
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -