Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0018
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   4.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   4.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 528 LLNGRNCFFGSTTNALPGITPSFSSNITAINLSVV 424
           LL+GR+    STT   PG TP+  + + A+N+  V
Sbjct: 372 LLSGRSQ--KSTTGPPPGPTPAQKARMRALNIDRV 404


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 641 VDRGYDFTGVLEWFAERVDRII 706
           +DR Y+ T + +WF  ++  II
Sbjct: 267 IDRLYELTKIDKWFLHKMKNII 288


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 26  FVINLIQKWCSECI 67
           FV+NL   +CS+CI
Sbjct: 352 FVVNLWSGFCSQCI 365


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 364 VCFTVWMYLSPREVXLWVWLYEIW 293
           VC+ +W+Y  P    L++ +Y  W
Sbjct: 218 VCYGIWVYFVP----LFLIIYSYW 237


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 364 VCFTVWMYLSPREVXLWVWLYEIW 293
           VC+ +W+Y  P    L++ +Y  W
Sbjct: 94  VCYGIWVYFVP----LFLIIYSYW 113


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 295  WSLSKLSANGXIRGYW 248
            WS S + + G + G+W
Sbjct: 1213 WSESNVESKGRLLGFW 1228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,893
Number of Sequences: 438
Number of extensions: 5066
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)