Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0017
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   1.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.0  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 264 GLQLLPSCTLRPVQLSSRC 320
           GL LLP    RP  L+S+C
Sbjct: 148 GLNLLPMNRNRPAYLASKC 166


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 15/71 (21%), Positives = 31/71 (43%)
 Frame = +1

Query: 10  SRLVDPRAAGIRHEAQSLSGSACDKKTQGPTKVEMTSARKYVVKNHFKGVSKQEDYELVE 189
           S+L  PRA+ +     S+     +     P  +E+T A  Y +       +   +++ + 
Sbjct: 735 SQLQIPRASLV--STTSVKSLRLEGDETPPYGMELTEAEHYALYTAMAPHATASEFDEMS 792

Query: 190 FVIPPLIDGEV 222
           F   P+ DG++
Sbjct: 793 FYYSPVEDGKI 803


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 355 LPDSCYPLIGQQHRLDN*TGRRVQLGKSCKPLNT 254
           LP    PL+G Q   D+ T     L  S KP N+
Sbjct: 489 LPPREAPLVGVQPHQDSATPADQPLDLSAKPKNS 522



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 386 ATTTSSLLVRNLTLQR 433
           ATTT++ L++  TLQR
Sbjct: 125 ATTTATGLIKQETLQR 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,060
Number of Sequences: 438
Number of extensions: 3584
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)