Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0016
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 30 0.30
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 27 2.1
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 27 2.8
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|... 26 3.7
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 26 3.7
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 4.9
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 25 6.4
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 25 6.4
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 25 6.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 6.4
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 25 8.5
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch... 25 8.5
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 25 8.5
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi... 25 8.5
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 29.9 bits (64), Expect = 0.30
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 266 LEGQAKGVKTCKFSSIKIDLE---KEIGGYEFTCDIDIEGKYKVFSESPLIKNLLGGTTV 436
+EG + G + K S +K+ L+ KE+ + F+ + KY+V + KN L T
Sbjct: 57 IEGHSSGFEALK-SLLKVCLKLGVKEVSAFTFSIENFKRSKYEVDMLMEIAKNSLTQITA 115
Query: 437 HGE 445
HG+
Sbjct: 116 HGD 118
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 89 VDTLGKCSLKDEECTKSLINNAL-NEISSTGIPELDIPPVDPIALKNVSVTVLGLV 253
+D LG + TKSL NN+L NE +P D + ++ + T L V
Sbjct: 255 LDNLGMTFCASQALTKSLENNSLDNESCVRVVPSFDHEEIGSVSAQGAESTFLPAV 310
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/77 (24%), Positives = 29/77 (37%)
Frame = +2
Query: 206 DPIALKNVSVTVLGLVDITLLEGQAKGVKTCKFSSIKIDLEKEIGGYEFTCDIDIEGKYK 385
D + ++ V +G+ + KGV I + GY T DID E +
Sbjct: 200 DIVRTADIVVAAIGIPHFVKADWLKKGVVAIDVGINSIPDATKKSGYRLTGDIDFENAKE 259
Query: 386 VFSESPLIKNLLGGTTV 436
V S + +G TV
Sbjct: 260 VASAITPVPGSVGPMTV 276
>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 572
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 95 TLGKCSLKDEECTKSLINNALNEISSTGIP 184
TL +C++ ++C+K LIN N ++ G P
Sbjct: 539 TLIECNIDQDDCSKELINWGHNVGAANGKP 568
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/27 (29%), Positives = 20/27 (74%)
Frame = +2
Query: 155 LNEISSTGIPELDIPPVDPIALKNVSV 235
+++ +S +PEL+ PP++ + L+++ V
Sbjct: 1 MSDTTSLNVPELESPPIERVELESLLV 27
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 138 LFVHSSSLREHFPRVSTNAASPKTIKPKRKINIRAI 31
L + ++R+HFP+ + T+ K+NI AI
Sbjct: 1235 LHILDITIRKHFPQFDNFSPELSTVTEAAKLNIEAI 1270
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 373 REV*SVFRKPSYKELVGR---HDRPWRRKWKSSIRKTTNQYEISRV 501
R++ + PS K V DRP RR+ IRK QY ++ +
Sbjct: 350 RKIEKLLEPPSQKPTVALPVPDDRPKRRRGGRRIRKMKEQYAVTEL 395
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -1
Query: 435 TVVPPNKFFIRGLSENTLYFPSISISQVNSYPPISFSK 322
T +P N + ++ + LY IS+ SY P+ +K
Sbjct: 356 TQLPENTYVLKEETSMVLYDEQCKISESPSYSPVKLAK 393
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.4 bits (53), Expect = 6.4
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Frame = +2
Query: 308 SIKIDLEKEIGGY--EFTCDIDIEGKY---KVFSESPLIKNLLGGTTVHGEGNGKVQLEK 472
S+K+++E E+ G+ + + DIE + + P + G H GN QL
Sbjct: 53 SVKMEVE-EVNGHVDSSSTETDIEMQVIQQPTIPKKPPVSAHRRGPRKH-RGNANSQLNL 110
Query: 473 LQISMKFPVYA--QKRDDGEIYMKCD 544
+ P+Y QK DDG + CD
Sbjct: 111 STADHQRPLYCICQKPDDGSWMLGCD 136
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 6.4
Identities = 29/95 (30%), Positives = 39/95 (41%)
Frame = -1
Query: 375 PSISISQVNSYPPISFSKSIFIELNLQVFTPFA*PSSNVMSTSPRTVTETFFKAMGSTGG 196
P S S +NS PIS S I + + + + SS V S S + + S+GG
Sbjct: 3467 PITSSSVLNSSTPISSSTVITSSVVIGSSSVLSYASSIVSSVSLNS------SLLSSSGG 3520
Query: 195 ISNSGIPVDDISFRALLIRLFVHSSSLREHFPRVS 91
S+S SF V SSSL P +S
Sbjct: 3521 FSSSAFSTGSSSFSLTSENGSVSSSSLVSSSPVLS 3555
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 143 INNALNEISSTGIPELDIPPVDPIALKNVSVTVLGLV 253
+N AL I S G+P +I P D I N+ + +LGL+
Sbjct: 72 VNKALEYIKSKGMPLTNIGPAD-IVDGNLKL-ILGLI 106
>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 213
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +2
Query: 188 LDIPPVDPIALKNVSVTVLGLVDITLLEGQAKGVKTCK 301
LDI P D LKN + GL E K K CK
Sbjct: 155 LDIMPADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCK 192
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 218 KQWGPRVEYLIQVYP*TIFHL 156
K W RV +LIQ +P ++H+
Sbjct: 105 KNWYSRVLFLIQSFPTRLYHI 125
>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 267 SNVMSTSPRTVTETFFKAMGSTGGISNSGIPVDDIS 160
+ + +P T F A+ + SN+GIP++DI+
Sbjct: 21 AQIRFVTPATTDSMDFTAISFSWEESNTGIPLEDIT 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,818
Number of Sequences: 5004
Number of extensions: 50885
Number of successful extensions: 155
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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