Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0016
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0127 - 955244-956278,956397-956651                               28   6.5  
02_05_1133 + 34346894-34347121,34347222-34347283,34347373-343474...    28   6.5  
10_05_0006 + 7752426-7752497,7752663-7753223                           27   8.7  
08_01_0650 + 5617578-5618633,5619580-5619735,5619816-5620058           27   8.7  

>07_01_0127 - 955244-956278,956397-956651
          Length = 429

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 314 KIDLEKEIGGYEFTCDIDIEGKYKVFSESPLIKNLL 421
           KIDL    G +    D+ ++GKYK   E P   +LL
Sbjct: 58  KIDLRDRFGDFNSNIDLVLKGKYKCIQE-PYSMHLL 92


>02_05_1133 +
           34346894-34347121,34347222-34347283,34347373-34347460,
           34348005-34348268,34348346-34348586,34348672-34348748,
           34348837-34349007,34349084-34349176,34349257-34349406,
           34349491-34349577,34349656-34349820,34349900-34350019,
           34350244-34350446,34350547-34350696,34350779-34350926,
           34351046-34351129,34351207-34351308
          Length = 810

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = +2

Query: 137 SLINNALNEISSTGIPELDIPPVDPIALKNVSVTVLGLVDITLLEGQAKGVKTCKFSSIK 316
           S++   LN+I  T    ++      +  + + + V GL D  +L G      + +   + 
Sbjct: 490 SIVTRNLNKIIDTNYYPVETAKRSNMRHRPIGIGVQGLADTFILLGMP--FDSTEAQQLN 547

Query: 317 IDLEKEIGGYEFTCDIDI---EGKYKVFSESPLIKNLL 421
            D+ + I  +      +I   EG Y+ +S SP+ K +L
Sbjct: 548 KDIFETIYYHALKASAEIAAKEGPYETYSGSPVSKGIL 585


>10_05_0006 + 7752426-7752497,7752663-7753223
          Length = 210

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +1

Query: 187 IRYSTRGPHCFEKCFRDCSWTG---GHNIA 267
           +R    GP   +KC R CSW G   GHN++
Sbjct: 148 VRLGAPGP---KKCTRGCSWCGLKDGHNVS 174


>08_01_0650 + 5617578-5618633,5619580-5619735,5619816-5620058
          Length = 484

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 188 LDIPPVDPIALKNVSVTVLGLVDITLLEGQAKGVKTCKFSSIK 316
           +DI  +  I  +  S+  L L D+ LLEGQ +     + S IK
Sbjct: 169 MDIRSITQICSRCTSLEELELEDVRLLEGQIQSASLKRLSIIK 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,381,196
Number of Sequences: 37544
Number of extensions: 307407
Number of successful extensions: 865
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)