Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0016
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48878| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                29   2.2  
SB_33412| Best HMM Match : ANF_receptor (HMM E-Value=0)                29   2.2  
SB_51449| Best HMM Match : tRNA-synt_2c (HMM E-Value=1.4)              29   3.8  
SB_18926| Best HMM Match : Colipase_C (HMM E-Value=0.0043)             29   3.8  
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_48225| Best HMM Match : DUF234 (HMM E-Value=5.3)                    28   6.7  
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)          28   6.7  
SB_19422| Best HMM Match : Mnd1 (HMM E-Value=4.3)                      27   8.8  
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  27   8.8  

>SB_48878| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 1213

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 1/124 (0%)
 Frame = +2

Query: 143 INNALNEISSTGIPELDIPPVDPIALKNVSVTVLGLVDITLLEGQAKGV-KTCKFSSIKI 319
           +N     I +  +PE   PP  P+AL   S       D  L    A+   +  KF+ + +
Sbjct: 105 LNTVYRWIENQALPEPPDPPDSPLALGLESGAT---PDSKLQASSARQAGQAAKFARLHL 161

Query: 320 DLEKEIGGYEFTCDIDIEGKYKVFSESPLIKNLLGGTTVHGEGNGKVQLEKLQISMKFPV 499
              K+          D E    +       ++L+ G  + G GNG+  + +L I++   +
Sbjct: 162 QASKDNDACWCPDSADTEKSLDIMLSE---RSLVTGVAIQGRGNGQEWVTELTIAINDTI 218

Query: 500 YAQK 511
             Q+
Sbjct: 219 EGQE 222


>SB_33412| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 852

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 332 LSPNQFLLN*IYKFLHLLLDLQAMLCP 252
           ++P + ++N +Y F H L D+Q  LCP
Sbjct: 364 VAPVRVVINAVYAFAHALDDMQRTLCP 390


>SB_51449| Best HMM Match : tRNA-synt_2c (HMM E-Value=1.4)
          Length = 742

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -1

Query: 438 WTVVPPNKFFIRGLSENTLYFPSISISQVNSYPPISFSKSIFIELNLQVF 289
           W  +PP  + +  L+   LY   I IS   +   + F ++IFI L++ ++
Sbjct: 244 WAELPPQNYGLTFLTFIILYNNLIPISLTVTLEVVKFIQAIFINLDIDMY 293


>SB_18926| Best HMM Match : Colipase_C (HMM E-Value=0.0043)
          Length = 811

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 95  TLGK--CSLKDEECTKSLINNALNEISSTGIPELDIPPVDPIA 217
           T GK   SL ++ECT    NN    +S+T + ELD P  + IA
Sbjct: 611 TFGKPISSLVNKECTNG--NNCGTPLSTTKVDELDAPLTEMIA 651


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 56   FGLIVFGDAAFVDT 97
            +GLIVFGDAAF +T
Sbjct: 3710 YGLIVFGDAAFTET 3723


>SB_48225| Best HMM Match : DUF234 (HMM E-Value=5.3)
          Length = 242

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -1

Query: 177 PVDDISFRALLIRLFVHSSSLREHFPRVSTNAASPKTIKPKRKINIRAIFVAMNLXATA 1
           PVDD   RA L +LF     L     +++  +     +K K K ++ A  +AM++   A
Sbjct: 137 PVDDFQPRAQLRKLFQDKDILSSDEVKITDFSTKTHKMKKKDKEHLIAAHIAMSIVPDA 195


>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 208 PHCFEKCFRDCSWTGGHN 261
           P CF+ C R C W   HN
Sbjct: 79  PCCFKVCHRTCFWRWAHN 96


>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
          Length = 646

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 208 PHCFEKCFRDCSWTGGHN 261
           P CF+ C R C W   HN
Sbjct: 79  PCCFKVCHRTCFWRWAHN 96


>SB_19422| Best HMM Match : Mnd1 (HMM E-Value=4.3)
          Length = 386

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +2

Query: 86  FVDTLGKCSLKDEECTKSLINNALNEISSTGIPE----LDIPPVDPIALKNVSV 235
           FV T+    + D EC+  L  +A++   S  +P     +D+PP D +A+  + V
Sbjct: 125 FVTTI---DISDSECSNDLEVSAIDVPESPQLPAPVSVIDLPPADDVAVSVIDV 175


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 182 PELDIPPVDPIALKNVSVTVLGLVDI 259
           PE++IPP  P+  + +   V+  +D+
Sbjct: 97  PEIEIPPTQPVTEEQILTGVVAFIDV 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,574,829
Number of Sequences: 59808
Number of extensions: 353592
Number of successful extensions: 819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)